Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   LUV23_RS39645 Genome accession   NZ_CP089536
Coordinates   9615081..9616085 (-) Length   334 a.a.
NCBI ID   WP_206333946.1    Uniprot ID   -
Organism   Streptomyces sp. HNM0561     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 9610081..9621085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUV23_RS39625 (LUV23_39625) - 9610240..9610626 (-) 387 WP_206333942.1 hypothetical protein -
  LUV23_RS39630 (LUV23_39630) - 9611058..9611879 (-) 822 WP_206333943.1 crotonase/enoyl-CoA hydratase family protein -
  LUV23_RS39635 (LUV23_39635) - 9611876..9613522 (-) 1647 WP_206333944.1 acyl-CoA dehydrogenase family protein -
  LUV23_RS39640 (LUV23_39640) - 9613626..9614369 (+) 744 WP_206333945.1 PaaX family transcriptional regulator C-terminal domain-containing protein -
  LUV23_RS39645 (LUV23_39645) cytR 9615081..9616085 (-) 1005 WP_206333946.1 LacI family DNA-binding transcriptional regulator Regulator
  LUV23_RS39650 (LUV23_39650) - 9616133..9617167 (-) 1035 WP_232564876.1 acyl-CoA dehydrogenase family protein -
  LUV23_RS39655 (LUV23_39655) - 9617219..9618406 (-) 1188 WP_206333947.1 acyl-CoA dehydrogenase family protein -
  LUV23_RS39660 (LUV23_39660) - 9618480..9619265 (+) 786 WP_100805354.1 SDR family oxidoreductase -
  LUV23_RS39665 (LUV23_39665) - 9619281..9620033 (+) 753 WP_269788947.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 35644.93 Da        Isoelectric Point: 6.5089

>NTDB_id=552028 LUV23_RS39645 WP_206333946.1 9615081..9616085(-) (cytR) [Streptomyces sp. HNM0561]
MHRPRPTLESVARRAGVSRATVSRVVNGSTKVGEDSREAVLSAIQELGYIPNQAARSLVTQRTDSFALVLPEEPGRVFSD
DRFFPGVVRGVSQELEAADKQLVLMMARSPASRDRIERFALARHVDGVMVASMHGADPLPAALVRMGIPVVCNERVPGPA
SPPYVGVDNAAGAALAVEHLLRSGRTRIATVAGPQDMVAGIDRLSGYRVALAGARLEAYVAAGDFTQESGAVAMRELLDR
EPGLDGVFVASDLMAIGVLRALRRAGRRVPEDVAVVGFDDIEPAGYTEPPLTTVRQPIAEIGCRLARQLLRLTAGEPIEP
ALVLPTELVIRESA

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=552028 LUV23_RS39645 WP_206333946.1 9615081..9616085(-) (cytR) [Streptomyces sp. HNM0561]
ATGCACCGGCCACGGCCCACCCTGGAGAGCGTGGCGCGCCGCGCCGGCGTCTCGCGCGCCACCGTCTCCCGTGTCGTCAA
CGGTTCCACGAAGGTCGGCGAGGACAGCCGTGAGGCGGTCCTGAGTGCCATCCAGGAGCTGGGCTACATCCCCAACCAGG
CCGCCCGCAGCCTCGTCACCCAGCGCACCGACTCCTTCGCACTGGTGCTCCCCGAGGAGCCGGGCCGGGTCTTCTCCGAC
GATCGGTTCTTCCCGGGCGTGGTGCGCGGGGTGAGCCAGGAGCTGGAGGCCGCGGACAAGCAGTTGGTGCTGATGATGGC
CCGCTCCCCCGCCAGCCGTGACCGCATCGAGCGCTTCGCCCTGGCCCGCCATGTCGACGGCGTCATGGTGGCGTCGATGC
ACGGCGCCGATCCGCTGCCGGCCGCGCTGGTCCGGATGGGCATCCCGGTGGTCTGCAACGAGCGGGTGCCGGGCCCGGCG
TCGCCGCCGTACGTGGGGGTGGACAACGCGGCGGGCGCGGCGCTGGCCGTCGAGCATCTGCTCCGCTCCGGGCGCACCCG
TATCGCCACGGTCGCGGGTCCCCAGGACATGGTGGCCGGGATCGACCGGCTCTCGGGCTACCGGGTGGCGCTGGCCGGTG
CGCGGCTGGAGGCGTATGTGGCGGCCGGGGACTTCACCCAGGAGTCCGGGGCGGTCGCGATGCGGGAGCTGCTGGACCGG
GAGCCGGGGCTGGACGGGGTGTTCGTGGCCTCCGACCTGATGGCGATCGGGGTGCTGCGGGCGCTGCGCCGGGCCGGGCG
AAGGGTGCCGGAGGACGTGGCGGTGGTCGGCTTCGACGACATCGAGCCCGCGGGCTACACCGAGCCCCCGCTGACCACCG
TGCGCCAGCCCATAGCCGAAATCGGCTGCCGCCTGGCCCGCCAGTTGCTCCGCCTGACGGCGGGCGAGCCGATAGAACCG
GCGCTGGTTCTTCCCACCGAGTTGGTGATCCGCGAGTCGGCGTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(177-333)

Bacterial regulatory proteins, lacI family (LacI)

(7-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.588

100

0.362