Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   J4854_RS02230 Genome accession   NZ_CP072329
Coordinates   419156..421141 (+) Length   661 a.a.
NCBI ID   WP_200773097.1    Uniprot ID   A0A9X0WQG0
Organism   Streptococcus lactarius strain CCUG 66490     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 414156..426141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4854_RS02210 (J4854_02210) - 414561..415787 (+) 1227 WP_200773100.1 cysteine desulfurase -
  J4854_RS02215 (J4854_02215) sufU 415774..416208 (+) 435 WP_200773099.1 Fe-S cluster assembly sulfur transfer protein SufU -
  J4854_RS02220 (J4854_02220) sufB 416241..417653 (+) 1413 WP_003010279.1 Fe-S cluster assembly protein SufB -
  J4854_RS02225 (J4854_02225) - 417709..418950 (-) 1242 WP_200773098.1 serine hydrolase -
  J4854_RS02230 (J4854_02230) amiA3 419156..421141 (+) 1986 WP_200773097.1 peptide ABC transporter substrate-binding protein Regulator
  J4854_RS02235 (J4854_02235) amiC 421215..422714 (+) 1500 WP_200773096.1 ABC transporter permease Regulator
  J4854_RS02240 (J4854_02240) amiD 422714..423640 (+) 927 WP_200773095.1 oligopeptide ABC transporter permease OppC Regulator
  J4854_RS02245 (J4854_02245) amiE 423652..424719 (+) 1068 WP_200773094.1 ABC transporter ATP-binding protein Regulator
  J4854_RS02250 (J4854_02250) amiF 424730..425656 (+) 927 WP_200773093.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 72652.97 Da        Isoelectric Point: 5.1240

>NTDB_id=552028 J4854_RS02230 WP_200773097.1 419156..421141(+) (amiA3) [Streptococcus lactarius strain CCUG 66490]
MKKGKVFAVAGVTLLAAGLLAACSSSNTSKASSGEDKNYGYVYTSDPTTLDYTISSKAATHDITTNVVDGLLENDKYGNL
VPSLAEDWSVSKDGLTYTYKIRKGVKWYDADGEEHGEVTAKDFVTGLKHAADKKSEELPLVQGSIKGLDDYVQGKTTDFS
QVGVKAVDDYTLQYTLNKPETFWNSKTTNGILFPISTEFLKSKGDDFGQPNDVKSILANGPFLLKSITSKSSVVFEKNDN
YWDKKNVHLKEVKYTYYDGSDQDSLARGFSDGAYTKARLFPASSNFATVEKKYKDDIFTTPAGSGVAVLGFNLDRQSYKH
TAKKSDAEKSSTKKAILNKDFRQAITFALNRESYSAQVNGKEFAKPAIRNTYVAPAFVQVDGKDFGNVVADKLTTYGDQW
KGINLADGQDGLYNKDKAKAQLEKAKAELQKDGVQFPIHIDVPVAQNSTNFVSRMQSLKQTVEDTLGKDNVVLDLQMMDS
DEVLNITLNVPSAADADWDLQGMVGWNPDYDDPSTYLDTLQPASEDQTKVYLGFAGGVDNPSAKAVGLDEFAKLLDDANN
ESQDVVKRYEKYAEAQAWLSDSAIVIPTMSSTGAATVVSKVVPFSEPSSQTGNKGSTYLKYVEVQDEPVTKKQYDEALKK
WQKEKAESNKKAQQDLEKHVK

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=552028 J4854_RS02230 WP_200773097.1 419156..421141(+) (amiA3) [Streptococcus lactarius strain CCUG 66490]
ATGAAAAAAGGTAAAGTATTCGCAGTTGCCGGAGTAACACTCCTTGCAGCTGGATTGTTAGCTGCATGTTCTAGTTCAAA
TACTAGCAAAGCAAGCTCAGGCGAAGACAAAAACTATGGTTATGTCTATACTTCAGATCCAACAACTTTGGACTATACAA
TTTCTTCTAAAGCTGCTACCCATGACATCACTACAAATGTGGTAGACGGTTTGTTAGAAAATGATAAATACGGTAACCTT
GTACCTTCACTTGCGGAAGACTGGTCTGTTTCTAAAGACGGTTTGACTTATACCTACAAGATTCGTAAAGGTGTCAAATG
GTATGATGCGGATGGTGAAGAACACGGCGAAGTGACTGCCAAAGACTTCGTGACTGGTTTGAAACACGCTGCTGATAAAA
AATCAGAAGAACTTCCACTAGTTCAAGGCTCAATCAAAGGCTTGGATGATTATGTGCAAGGAAAAACTACAGACTTCAGC
CAAGTTGGTGTCAAAGCGGTTGATGATTACACACTTCAATACACATTGAACAAACCTGAAACTTTCTGGAACTCTAAAAC
GACTAACGGAATTTTGTTCCCAATAAGCACAGAGTTCTTGAAGAGTAAGGGAGATGATTTTGGTCAACCAAACGATGTGA
AGTCAATCCTTGCAAACGGACCTTTCCTTCTTAAATCAATCACTTCAAAATCATCTGTTGTATTTGAAAAGAATGACAAC
TACTGGGATAAGAAAAACGTTCACCTGAAAGAAGTAAAATATACTTATTACGATGGATCAGACCAAGATTCATTGGCACG
TGGATTCTCTGATGGTGCTTATACAAAAGCTCGCCTTTTCCCTGCAAGTTCAAACTTTGCAACTGTAGAAAAAAAATATA
AAGACGATATCTTTACTACACCAGCAGGATCAGGTGTAGCAGTTCTTGGCTTTAACCTTGATCGTCAATCTTACAAACAC
ACTGCTAAGAAATCCGATGCTGAAAAATCTTCTACTAAGAAAGCAATTTTGAACAAAGATTTCCGTCAGGCCATCACTTT
TGCCTTGAACCGTGAAAGCTACTCAGCACAAGTCAATGGTAAAGAATTTGCTAAACCAGCTATCCGTAATACATATGTTG
CGCCTGCGTTCGTACAAGTAGATGGAAAAGACTTCGGAAATGTAGTTGCAGATAAGTTGACTACTTATGGAGACCAATGG
AAGGGTATCAACCTTGCAGATGGTCAAGATGGTCTTTACAACAAAGATAAAGCGAAAGCACAACTTGAAAAAGCCAAAGC
TGAACTTCAAAAAGATGGTGTTCAATTCCCAATTCATATTGATGTACCGGTAGCACAAAATTCTACAAACTTTGTTTCAC
GGATGCAATCTCTGAAACAAACTGTGGAAGATACTCTTGGTAAAGACAATGTCGTTCTTGATCTTCAAATGATGGACTCA
GACGAAGTGTTGAATATTACTTTGAATGTGCCATCAGCTGCAGACGCAGACTGGGATCTTCAAGGAATGGTCGGATGGAA
CCCAGACTATGATGATCCATCAACTTACCTTGATACTCTTCAACCAGCTTCTGAGGACCAAACAAAAGTTTACCTTGGTT
TTGCAGGTGGTGTAGATAACCCATCAGCAAAAGCTGTAGGTTTGGATGAGTTTGCAAAACTTCTTGATGATGCAAACAAC
GAATCACAAGATGTTGTGAAACGTTATGAAAAATATGCTGAAGCTCAAGCTTGGTTGAGTGATAGTGCGATTGTTATTCC
AACGATGTCAAGTACAGGTGCTGCAACAGTTGTTTCTAAGGTAGTTCCATTCTCTGAACCATCATCACAAACAGGTAACA
AAGGTTCAACATACTTGAAATACGTTGAAGTTCAAGATGAGCCGGTTACTAAGAAACAATACGATGAAGCCCTTAAGAAA
TGGCAAAAAGAAAAAGCTGAGTCAAATAAAAAAGCTCAACAAGATCTTGAAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(80-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.036

100

0.593
  amiA3 Streptococcus thermophilus LMG 18311

58.584

100

0.588
  amiA Streptococcus salivarius strain HSISS4

58.157

100

0.582