Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   J4854_RS02235 Genome accession   NZ_CP072329
Coordinates   421215..422714 (+) Length   499 a.a.
NCBI ID   WP_200773096.1    Uniprot ID   A0A9X0WPL0
Organism   Streptococcus lactarius strain CCUG 66490     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 416215..427714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4854_RS02220 (J4854_02220) sufB 416241..417653 (+) 1413 WP_003010279.1 Fe-S cluster assembly protein SufB -
  J4854_RS02225 (J4854_02225) - 417709..418950 (-) 1242 WP_200773098.1 serine hydrolase -
  J4854_RS02230 (J4854_02230) amiA3 419156..421141 (+) 1986 WP_200773097.1 peptide ABC transporter substrate-binding protein Regulator
  J4854_RS02235 (J4854_02235) amiC 421215..422714 (+) 1500 WP_200773096.1 ABC transporter permease Regulator
  J4854_RS02240 (J4854_02240) amiD 422714..423640 (+) 927 WP_200773095.1 oligopeptide ABC transporter permease OppC Regulator
  J4854_RS02245 (J4854_02245) amiE 423652..424719 (+) 1068 WP_200773094.1 ABC transporter ATP-binding protein Regulator
  J4854_RS02250 (J4854_02250) amiF 424730..425656 (+) 927 WP_200773093.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55647.67 Da        Isoelectric Point: 10.0735

>NTDB_id=552029 J4854_RS02235 WP_200773096.1 421215..422714(+) (amiC) [Streptococcus lactarius strain CCUG 66490]
MKKYVFMRILRSLVSIFLVTTLTYMIIYTLTPRNLIFKNDPNYNKVAKTKDSKINYENTVYDRMGYLEYMDSKTLQQKAS
KENSSVTVDATSANEKIYNKYINKLGHGWQLKRFPESKSFYAVREIPVFERVIGFYGNLIQFDHPGVVKDASNPNLKRYI
RIENDPSIGWSVVGSGTKHKYLLYFNGQFPYVHQNFVSLNLGDSYPTYSNTPVLQVISQGQGTTKKSEVNFPTGKKISSI
DIYSRTYKSPSKADSQDIDRFGKGDAYTATLSNYENPSMIASSSIIGLIGIAIAYLIAVPLGSYMALLKNSWFDSISTGA
LTFMMSLPTIALVYIVRLAGSLFGLPDSFPVLGAQDWRSYVLPSLILGLLSAPFIAVWIRRYMIDIHSQDFVRFARSKGL
SEKEISKKHIFKNAMVPLVSGIPGSIIGVISGATLTETVFAFPGMGKMLIDSIKASNNTMVIGLVFIFTSLGIFAAMLGD
ILMTVLDPRIKLTNTKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=552029 J4854_RS02235 WP_200773096.1 421215..422714(+) (amiC) [Streptococcus lactarius strain CCUG 66490]
ATGAAAAAATATGTTTTTATGCGTATTTTACGTTCATTGGTGTCAATCTTCCTTGTGACGACATTGACCTACATGATCAT
TTATACGCTTACCCCGAGAAATCTCATCTTCAAAAATGACCCAAACTATAACAAAGTTGCGAAGACAAAAGATTCGAAGA
TCAACTACGAAAACACTGTCTATGACCGCATGGGTTATTTAGAATACATGGACTCTAAAACCTTGCAACAAAAAGCAAGT
AAGGAAAATTCTTCTGTAACGGTTGATGCAACATCAGCTAACGAAAAGATCTATAACAAATACATTAACAAATTAGGTCA
TGGTTGGCAGTTGAAACGGTTCCCAGAAAGCAAATCCTTCTATGCAGTTCGAGAAATCCCAGTTTTTGAGCGTGTTATTG
GCTTCTATGGCAATTTGATTCAATTTGATCATCCAGGAGTGGTTAAAGATGCTTCAAATCCAAATCTCAAACGCTACATC
CGTATTGAAAATGATCCGTCAATTGGATGGTCTGTAGTTGGTTCTGGTACCAAGCACAAGTATCTCTTGTACTTCAATGG
ACAATTCCCATATGTTCATCAGAACTTTGTGAGCCTAAACCTTGGGGATTCTTACCCAACTTATTCAAATACTCCAGTTC
TTCAAGTAATTTCGCAAGGACAAGGAACAACCAAGAAGAGTGAAGTGAATTTCCCTACAGGTAAGAAGATTTCTTCTATC
GATATCTATTCACGTACCTACAAATCACCAAGTAAGGCAGACTCACAAGATATTGACCGTTTTGGTAAAGGAGATGCCTA
TACAGCAACATTGAGCAATTACGAAAACCCTTCCATGATTGCAAGTTCTTCTATTATTGGTTTGATCGGTATTGCCATTG
CTTACTTGATTGCGGTCCCACTCGGATCTTATATGGCTCTTTTGAAGAACTCATGGTTTGATAGTATTTCAACTGGTGCT
TTGACATTCATGATGTCTCTTCCAACTATTGCCTTGGTTTATATCGTACGTTTGGCAGGTTCTTTATTTGGACTTCCAGA
TTCATTCCCAGTTCTTGGGGCACAAGATTGGCGTTCATACGTCTTGCCATCGCTGATTCTGGGCTTGTTGAGTGCACCAT
TTATTGCCGTTTGGATCCGTCGATACATGATCGATATTCACTCACAAGATTTTGTCCGTTTTGCTCGTTCAAAAGGTTTG
TCAGAAAAAGAAATTTCGAAAAAACATATTTTCAAAAATGCTATGGTACCATTGGTATCAGGTATTCCAGGATCTATTAT
CGGGGTTATCTCAGGTGCGACTCTTACAGAAACAGTCTTTGCCTTCCCTGGTATGGGTAAAATGTTGATTGACTCTATTA
AAGCATCAAATAACACCATGGTGATCGGGCTTGTCTTTATCTTTACTTCGCTTGGTATCTTTGCAGCGATGTTAGGAGAT
ATCTTGATGACAGTGCTTGACCCACGGATTAAATTGACAAATACGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

70.741

100

0.707
  amiC Streptococcus thermophilus LMD-9

70.741

100

0.707
  amiC Streptococcus thermophilus LMG 18311

70.741

100

0.707