Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   J4854_RS02240 Genome accession   NZ_CP072329
Coordinates   422714..423640 (+) Length   308 a.a.
NCBI ID   WP_200773095.1    Uniprot ID   -
Organism   Streptococcus lactarius strain CCUG 66490     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 417714..428640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4854_RS02230 (J4854_02230) amiA3 419156..421141 (+) 1986 WP_200773097.1 peptide ABC transporter substrate-binding protein Regulator
  J4854_RS02235 (J4854_02235) amiC 421215..422714 (+) 1500 WP_200773096.1 ABC transporter permease Regulator
  J4854_RS02240 (J4854_02240) amiD 422714..423640 (+) 927 WP_200773095.1 oligopeptide ABC transporter permease OppC Regulator
  J4854_RS02245 (J4854_02245) amiE 423652..424719 (+) 1068 WP_200773094.1 ABC transporter ATP-binding protein Regulator
  J4854_RS02250 (J4854_02250) amiF 424730..425656 (+) 927 WP_200773093.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34672.71 Da        Isoelectric Point: 10.0005

>NTDB_id=552030 J4854_RS02240 WP_200773095.1 422714..423640(+) (amiD) [Streptococcus lactarius strain CCUG 66490]
MATIDKNKFQFVKRDDFASEVIDAPAYSYWRSVFRQFLKKRTTIIMLAILVSILLMSFVYPMFSKFDYNDVSKVNDFTAR
LNPPSAKAFFGTDNNGKSLFDGVWFGARNSIVISFIATVINVVVGVIVGGIWGISKSIDRIMMEVYNVISNIPFMLIVIV
LTYSMGSGFWNLILAMSLTGWIGIAYTIRVQIMRYRDLEYNLASRTLGTPTFKIVTKNILPQLVSVIVTQTSQLLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTVLILVSLSFFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=552030 J4854_RS02240 WP_200773095.1 422714..423640(+) (amiD) [Streptococcus lactarius strain CCUG 66490]
ATGGCTACAATCGATAAAAATAAATTCCAATTTGTAAAGCGTGATGATTTTGCCTCTGAAGTAATTGATGCTCCTGCGTA
TTCTTACTGGAGATCCGTATTCAGACAGTTCTTGAAAAAAAGAACGACCATTATTATGCTGGCCATCTTGGTTAGTATCT
TATTGATGAGTTTTGTTTACCCAATGTTTTCAAAATTCGATTACAACGATGTTAGTAAGGTAAACGACTTTACAGCTCGT
TTGAATCCACCTAGTGCCAAAGCCTTCTTCGGTACAGATAACAACGGTAAATCTCTCTTTGATGGGGTTTGGTTCGGGGC
TCGTAACTCCATTGTTATTTCCTTTATTGCGACAGTGATTAATGTGGTCGTCGGTGTTATCGTTGGTGGTATTTGGGGAA
TTTCAAAATCCATCGACCGAATTATGATGGAAGTTTACAACGTTATTTCAAACATTCCATTCATGTTGATCGTTATCGTC
TTGACCTATTCTATGGGATCTGGTTTCTGGAATTTGATTCTGGCCATGTCCTTGACAGGTTGGATCGGAATTGCCTACAC
TATTCGTGTCCAAATTATGCGTTACCGTGATTTGGAATATAACCTTGCCAGCCGAACTTTGGGAACACCAACCTTTAAAA
TTGTAACAAAAAATATTTTGCCACAATTGGTATCAGTTATCGTGACCCAAACATCTCAGTTGCTTCCAAGTTTTATTTCT
TACGAAGCCTTCCTTTCATTCTTTGGATTAGGTCTTCCAATCACCGTTCCAAGTTTGGGACGTTTGATTTCTGACTATTC
TCAAAACGTGACAACAAATGCCTACCTATTCTGGATTCCGTTGACTGTTTTGATCTTAGTATCCTTGTCATTCTTTATCG
TCGGACAAAACTTAGCCGATGCCAGCGACCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-84)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

78.896

100

0.789
  amiD Streptococcus thermophilus LMG 18311

77.597

100

0.776
  amiD Streptococcus thermophilus LMD-9

77.597

100

0.776