Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   J4854_RS02245 Genome accession   NZ_CP072329
Coordinates   423652..424719 (+) Length   355 a.a.
NCBI ID   WP_200773094.1    Uniprot ID   -
Organism   Streptococcus lactarius strain CCUG 66490     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 418652..429719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4854_RS02230 (J4854_02230) amiA3 419156..421141 (+) 1986 WP_200773097.1 peptide ABC transporter substrate-binding protein Regulator
  J4854_RS02235 (J4854_02235) amiC 421215..422714 (+) 1500 WP_200773096.1 ABC transporter permease Regulator
  J4854_RS02240 (J4854_02240) amiD 422714..423640 (+) 927 WP_200773095.1 oligopeptide ABC transporter permease OppC Regulator
  J4854_RS02245 (J4854_02245) amiE 423652..424719 (+) 1068 WP_200773094.1 ABC transporter ATP-binding protein Regulator
  J4854_RS02250 (J4854_02250) amiF 424730..425656 (+) 927 WP_200773093.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39431.06 Da        Isoelectric Point: 4.6284

>NTDB_id=552031 J4854_RS02245 WP_200773094.1 423652..424719(+) (amiE) [Streptococcus lactarius strain CCUG 66490]
MTTNNNIILSAQDIVVEFDVRDRVLTAIRGVSLELVEGEVLALVGESGSGKSVLTKTFTGMLEDNGRIAKGSIKYRGQEL
TELKSNKDWETIRGSKIATIFQDPMTSLDPINTIGSQITEVIIKHQGKTPKEAKEMALDYMDKVGIPDAERRFDEYPFQY
SGGMRQRIVIAIALACHPDILICDEPTTALDVTIQAQIIDLLKSLQKEYQFTVIFITHDLGVVASIADKVAVMYAGEIIE
FGKVEEIFYDPKHPYTWSLLSSLPQLSTSDGDLYSIPGTPPSLYAPIEGDAFALRSDYAMQIDFEEPAPAFKITDTHWAK
TWLLHPDAPAVHKPEVIENLHEKIGSKMGFTHITD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=552031 J4854_RS02245 WP_200773094.1 423652..424719(+) (amiE) [Streptococcus lactarius strain CCUG 66490]
ATGACAACCAATAATAATATTATTTTATCTGCTCAAGATATCGTAGTGGAATTTGATGTGCGCGACCGCGTATTAACAGC
TATTCGTGGCGTATCGCTTGAGCTAGTAGAAGGTGAAGTTCTTGCCTTAGTTGGTGAATCTGGATCCGGAAAATCAGTTT
TGACAAAAACCTTCACCGGTATGTTAGAAGATAATGGCCGTATTGCCAAAGGTAGTATTAAATACCGTGGTCAAGAATTG
ACAGAGCTGAAATCCAATAAAGATTGGGAAACCATTCGTGGGTCTAAGATTGCTACGATTTTCCAAGATCCTATGACCAG
CTTGGATCCAATCAATACCATTGGATCACAAATTACAGAAGTCATTATCAAACACCAAGGAAAAACACCTAAAGAAGCCA
AAGAAATGGCTTTGGATTATATGGACAAAGTTGGTATTCCAGATGCAGAACGCCGTTTTGACGAATACCCATTCCAATAC
TCTGGTGGGATGCGTCAACGGATCGTTATCGCCATTGCCTTGGCCTGCCACCCAGACATTTTGATCTGTGATGAACCAAC
GACAGCCCTTGATGTAACGATTCAAGCCCAAATCATTGATTTGTTGAAATCATTGCAAAAAGAATACCAATTTACAGTTA
TCTTTATCACCCACGACCTTGGTGTTGTTGCAAGTATTGCTGATAAAGTAGCGGTTATGTATGCTGGTGAGATTATAGAG
TTTGGTAAAGTAGAAGAAATTTTCTATGACCCTAAACATCCATATACTTGGAGTTTGCTTTCAAGTTTGCCACAATTATC
AACATCAGATGGAGACCTTTACTCTATTCCAGGTACACCACCATCCTTGTATGCTCCAATTGAAGGAGATGCCTTCGCCC
TTCGCTCAGATTATGCTATGCAAATAGACTTTGAAGAGCCAGCTCCAGCCTTCAAAATTACAGATACACACTGGGCTAAG
ACTTGGTTGCTTCATCCAGATGCTCCAGCAGTCCATAAACCTGAAGTAATTGAAAACCTTCACGAAAAAATTGGCTCAAA
AATGGGCTTCACTCACATTACAGATTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

82.817

100

0.828
  amiE Streptococcus thermophilus LMG 18311

81.972

100

0.82
  amiE Streptococcus thermophilus LMD-9

81.972

100

0.82
  oppD Streptococcus mutans UA159

55.942

97.183

0.544