Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   J5M87_RS07065 Genome accession   NZ_CP072115
Coordinates   1486985..1487593 (-) Length   202 a.a.
NCBI ID   WP_076996025.1    Uniprot ID   A0A4Y9J7L1
Organism   Streptococcus zhangguiae strain zg-86     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1481985..1492593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5M87_RS07040 (J5M87_07040) - 1482508..1483272 (-) 765 WP_154608474.1 ABC transporter ATP-binding protein -
  J5M87_RS07045 (J5M87_07045) - 1483272..1484222 (-) 951 WP_154608475.1 branched-chain amino acid ABC transporter permease -
  J5M87_RS07050 (J5M87_07050) - 1484225..1485112 (-) 888 WP_154608476.1 branched-chain amino acid ABC transporter permease -
  J5M87_RS07055 (J5M87_07055) - 1485261..1486445 (-) 1185 WP_154608477.1 ABC transporter substrate-binding protein -
  J5M87_RS07060 (J5M87_07060) - 1486534..1486809 (-) 276 WP_154608478.1 YlbG family protein -
  J5M87_RS07065 (J5M87_07065) clpP 1486985..1487593 (-) 609 WP_076996025.1 ATP-dependent Clp protease proteolytic subunit Regulator
  J5M87_RS07070 (J5M87_07070) upp 1488016..1488645 (-) 630 WP_154608480.1 uracil phosphoribosyltransferase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22309.62 Da        Isoelectric Point: 5.2889

>NTDB_id=550545 J5M87_RS07065 WP_076996025.1 1486985..1487593(-) (clpP) [Streptococcus zhangguiae strain zg-86]
MEKENTMIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGLA
IVDTMNFIKADVQTIVMGMAASMGTIIASSGAKGKRFMLPHAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKIL
ADNSGKSVKQIHKDAERDYWMSAKETLDYGFIDQIMENNQLK

Nucleotide


Download         Length: 609 bp        

>NTDB_id=550545 J5M87_RS07065 WP_076996025.1 1486985..1487593(-) (clpP) [Streptococcus zhangguiae strain zg-86]
ATCGAAAAGGAGAACACTATGATTCCTGTAGTTATTGAACAAACCAGCCGTGGGGAGCGCTCGTATGATATTTACTCACG
CCTCTTAAAAGATCGTATTATCATGTTGACAGGCCCAGTTGAAGACAATATGGCAAATTCTGTTATTGCCCAGTTGCTCT
TCCTTGATGCGCAAGATCCAACCAAGGATATTTATCTCTATGTCAATACTCCTGGTGGTTCTGTCTCAGCAGGTCTTGCC
ATTGTGGACACCATGAACTTTATCAAGGCAGATGTCCAAACCATTGTTATGGGGATGGCAGCTAGCATGGGAACCATTAT
TGCGTCAAGTGGTGCCAAGGGCAAACGCTTCATGTTGCCACATGCAGAGTACATGATTCATCAACCAATGGGCGGTACTG
GTGGCGGTACGCAACAGACTGATATGGCGATTGCAGCTGAGCACCTATTAAAAACCCGTAACACACTAGAAAAAATTCTT
GCAGACAATTCAGGAAAAAGTGTTAAACAAATCCACAAAGATGCGGAACGTGATTACTGGATGAGTGCCAAAGAAACCCT
TGATTATGGCTTCATTGATCAGATTATGGAAAATAATCAGTTAAAATAG

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(17-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y9J7L1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pyogenes JRS4

92.857

97.03

0.901
  clpP Streptococcus pyogenes MGAS315

92.857

97.03

0.901
  clpP Streptococcus pneumoniae R6

91.795

96.535

0.886
  clpP Streptococcus pneumoniae Rx1

91.795

96.535

0.886
  clpP Streptococcus pneumoniae D39

91.795

96.535

0.886
  clpP Streptococcus pneumoniae TIGR4

91.795

96.535

0.886
  clpP Streptococcus mutans UA159

87.624

100

0.876
  clpP Streptococcus thermophilus LMG 18311

89.796

97.03

0.871
  clpP Streptococcus thermophilus LMD-9

89.796

97.03

0.871
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

86.224

97.03

0.837
  clpP Lactococcus lactis subsp. cremoris KW2

85.714

97.03

0.832
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.031

95.545

0.554
  clpP Bacillus subtilis subsp. subtilis str. 168

56.122

97.03

0.545