Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   OSC7112_RS21125 Genome accession   NC_019729
Coordinates   5041487..5041852 (-) Length   121 a.a.
NCBI ID   WP_039886668.1    Uniprot ID   A0A964C1P6
Organism   Oscillatoria nigro-viridis PCC 7112     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5036487..5046852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSC7112_RS41870 - 5036853..5036975 (+) 123 WP_263053538.1 hypothetical protein -
  OSC7112_RS41185 - 5036991..5037152 (+) 162 WP_223300659.1 ATP-binding protein -
  OSC7112_RS21115 (Osc7112_4246) - 5037575..5040493 (+) 2919 WP_015177812.1 response regulator -
  OSC7112_RS21120 (Osc7112_4247) - 5040921..5041421 (+) 501 WP_015177813.1 hypothetical protein -
  OSC7112_RS21125 (Osc7112_4248) pilH 5041487..5041852 (-) 366 WP_039886668.1 response regulator transcription factor Machinery gene
  OSC7112_RS21130 (Osc7112_4249) - 5042178..5044514 (-) 2337 WP_015177815.1 GumC family protein -
  OSC7112_RS21135 (Osc7112_4250) - 5044665..5046137 (-) 1473 WP_015177816.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13524.75 Da        Isoelectric Point: 6.9522

>NTDB_id=54871 OSC7112_RS21125 WP_039886668.1 5041487..5041852(-) (pilH) [Oscillatoria nigro-viridis PCC 7112]
MSTVMVVDDSVTLREMIADLLKGRGLNVTVASDGVEALEQIKANRPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNLPVVM
CSSKSEEFDRYWGMKQGADAYIAKPFHPQELVGTIKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=54871 OSC7112_RS21125 WP_039886668.1 5041487..5041852(-) (pilH) [Oscillatoria nigro-viridis PCC 7112]
ATGAGTACAGTTATGGTTGTTGATGATAGCGTCACTCTGCGGGAGATGATCGCCGACTTGCTCAAAGGTAGAGGACTAAA
CGTCACGGTAGCGAGTGATGGCGTAGAAGCTCTAGAGCAAATCAAGGCTAACCGCCCCGATTTAGTCGTTCTGGATATAG
TGATGCCCCGGATGAACGGCTACGAAGTCTGTCGTCGGCTCAAAAGCGACCCTAAAACCCAAAATTTGCCGGTGGTAATG
TGTTCGAGCAAAAGCGAAGAGTTCGATCGATATTGGGGAATGAAACAAGGAGCCGACGCTTACATCGCCAAGCCATTTCA
CCCTCAAGAATTGGTCGGCACTATTAAGCAACTGCTGCGGGGTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

73.333

99.174

0.727
  pilG Acinetobacter baumannii strain A118

44.737

94.215

0.421
  chpA Acinetobacter baumannii strain A118

41.379

95.868

0.397
  chiS Vibrio cholerae strain A1552

40.708

93.388

0.38
  micA Streptococcus pneumoniae Cp1015

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

37.5

99.174

0.372
  scnR Streptococcus mutans UA159

37.288

97.521

0.364

Multiple sequence alignment