Detailed information    

insolico Bioinformatically predicted

Overview


Name   prx   Type   Regulator
Locus tag   SPYJRS4_RS05305 Genome accession   NZ_AP012335
Coordinates   1085636..1085818 (-) Length   60 a.a.
NCBI ID   WP_011184726.1    Uniprot ID   -
Organism   Streptococcus pyogenes JRS4     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1080636..1090818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYJRS4_RS05290 (SPYJRS4_1105) - 1081074..1081769 (-) 696 WP_002983928.1 phosphoglycerate mutase -
  SPYJRS4_RS05295 (SPYJRS4_1107) - 1082008..1082943 (+) 936 WP_010922443.1 dihydroorotate oxidase -
  SPYJRS4_RS05300 (SPYJRS4_1109) - 1083243..1085105 (-) 1863 WP_011184725.1 heavy metal translocating P-type ATPase -
  SPYJRS4_RS05305 (SPYJRS4_1110) prx 1085636..1085818 (-) 183 WP_011184726.1 hypothetical protein Regulator
  SPYJRS4_RS05310 (SPYJRS4_1111) mf2 1086058..1086816 (+) 759 WP_011184727.1 DNase Mf2 -
  SPYJRS4_RS05315 (SPYJRS4_1112) speC 1086927..1087634 (+) 708 WP_002985327.1 streptococcal pyrogenic exotoxin SpeC -
  SPYJRS4_RS05320 (SPYJRS4_1113) - 1087703..1088455 (-) 753 WP_030126404.1 CHAP domain-containing protein -
  SPYJRS4_RS05325 (SPYJRS4_1115) - 1088573..1089028 (-) 456 WP_011184730.1 phage holin family protein -
  SPYJRS4_RS05330 (SPYJRS4_1116) - 1089038..1089649 (-) 612 WP_011184731.1 DUF1366 domain-containing protein -
  SPYJRS4_RS05335 (SPYJRS4_1117) - 1089652..1090080 (-) 429 WP_011184732.1 DUF1617 family protein -

Sequence


Protein


Download         Length: 60 a.a.        Molecular weight: 6936.91 Da        Isoelectric Point: 4.1954

>NTDB_id=54857 SPYJRS4_RS05305 WP_011184726.1 1085636..1085818(-) (prx) [Streptococcus pyogenes JRS4]
MLTYDEFKQAIDNGYITADTVMIVRKNGQIFDYVLPNEKIKNGEIVTDEKVEEVLVELSR

Nucleotide


Download         Length: 183 bp        

>NTDB_id=54857 SPYJRS4_RS05305 WP_011184726.1 1085636..1085818(-) (prx) [Streptococcus pyogenes JRS4]
ATGCTAACATACGACGAATTTAAACAAGCAATTGACAATGGATATATCACAGCAGACACAGTAATGATCGTGCGCAAGAA
CGGACAGATTTTTGATTATGTGTTGCCGAATGAGAAGATAAAGAATGGAGAAATTGTGACAGACGAAAAAGTGGAAGAGG
TGCTGGTGGAGCTTTCGAGATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

98.333

100

0.983

  prx Streptococcus pyogenes MGAS8232

86.667

100

0.867

  prx Streptococcus pyogenes MGAS315

78.333

100

0.783

  prx Streptococcus pyogenes MGAS315

75

100

0.75

  prx Streptococcus pyogenes MGAS315

83.721

71.667

0.6

  prx Streptococcus pyogenes MGAS315

85.366

68.333

0.583

  prx Streptococcus pyogenes MGAS315

71.429

70

0.5


Multiple sequence alignment