Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J4N38_RS00275 Genome accession   NZ_CP071857
Coordinates   66742..67857 (+) Length   371 a.a.
NCBI ID   WP_252035672.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43145     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 61742..72857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N38_RS00255 (J4N38_00255) trkA 62237..63613 (-) 1377 WP_239838838.1 Trk system potassium transporter TrkA -
  J4N38_RS00260 (J4N38_00260) rsmB 63663..64943 (-) 1281 WP_252035667.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  J4N38_RS00265 (J4N38_00265) fmt 65000..65947 (-) 948 WP_252035670.1 methionyl-tRNA formyltransferase -
  J4N38_RS00270 (J4N38_00270) def 65970..66491 (-) 522 WP_006957514.1 peptide deformylase -
  J4N38_RS00275 (J4N38_00275) dprA 66742..67857 (+) 1116 WP_252035672.1 DNA-processing protein DprA Machinery gene
  J4N38_RS00280 (J4N38_00280) - 67860..68339 (+) 480 WP_006957516.1 DUF494 family protein -
  J4N38_RS00285 (J4N38_00285) - 68355..68939 (+) 585 WP_252035674.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  J4N38_RS00290 (J4N38_00290) - 68989..70122 (-) 1134 WP_252035677.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  J4N38_RS00295 (J4N38_00295) purE 70127..70612 (-) 486 WP_006957519.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  J4N38_RS00300 (J4N38_00300) - 70809..71366 (+) 558 WP_252035679.1 L-threonylcarbamoyladenylate synthase -
  J4N38_RS00305 (J4N38_00305) hemF 71388..72305 (+) 918 WP_252035681.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40369.17 Da        Isoelectric Point: 6.6560

>NTDB_id=548444 J4N38_RS00275 WP_252035672.1 66742..67857(+) (dprA) [Vibrio sp. SCSIO 43145]
MTKEELTAWLSLYFTPRIGPKTFQRLVAVDSPINIIDSSPETLRRLGFSDLQLNYLQHRAAEDIEACFEWQAASSVRTIL
PLSDHGYPALLKQADAAPATLFVEGRLESLSQPQMAIVGSRNASIDGLNTARSFATQLVNQDMVVTSGLALGVDGYAHDG
ALNGNGQTIAVLGCGLNSVYPARHKKLAQRIVQQGALVSEFHPNVKPKADNFPRRNRIISGLSLGVLVIEAAEKSGSLIT
ARYAMEQGREVFAIPGSIHHPHARGCNLLIKQGACLVQQVSDITDEIDSLIRWSDINKPPVQNDLFEQIDCKEELPFPQL
LANVGSKATPVDILASRTNIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=548444 J4N38_RS00275 WP_252035672.1 66742..67857(+) (dprA) [Vibrio sp. SCSIO 43145]
ATGACGAAAGAAGAACTGACGGCTTGGCTGAGCTTGTACTTTACGCCGCGGATTGGGCCCAAAACGTTTCAGCGTTTGGT
GGCGGTAGATTCTCCAATTAACATCATTGACTCTTCACCCGAGACATTACGCCGCTTAGGCTTTTCCGACTTGCAACTGA
ACTATCTCCAACACCGAGCTGCCGAGGATATTGAAGCGTGTTTTGAGTGGCAAGCAGCGTCCAGTGTCAGAACTATTCTG
CCTTTGAGTGACCATGGTTATCCGGCATTACTGAAACAGGCTGACGCTGCGCCAGCAACGCTGTTTGTTGAAGGTCGGCT
AGAGAGCCTGTCTCAGCCACAAATGGCGATTGTGGGCAGTCGCAATGCCAGTATTGATGGGCTTAACACTGCACGCAGCT
TTGCAACCCAGTTGGTGAATCAAGACATGGTCGTGACCAGCGGCTTGGCGCTAGGCGTTGATGGTTATGCCCATGATGGG
GCTCTGAATGGCAATGGCCAAACTATCGCCGTGCTCGGTTGTGGCTTAAACTCTGTGTATCCGGCAAGGCATAAAAAGTT
AGCTCAACGCATCGTTCAACAAGGGGCGTTGGTGTCTGAGTTCCATCCTAATGTGAAGCCAAAAGCCGATAATTTTCCAC
GCCGAAATCGAATCATTAGTGGTTTGTCATTGGGCGTTTTAGTCATAGAAGCGGCAGAGAAAAGTGGTTCTTTAATCACT
GCTCGCTACGCGATGGAGCAAGGTCGAGAAGTGTTTGCCATACCGGGCTCGATTCATCATCCCCATGCGAGAGGCTGTAA
CCTGTTGATAAAGCAAGGTGCGTGCTTGGTTCAACAGGTTTCTGACATAACCGATGAAATCGACAGCTTGATTCGCTGGT
CTGATATTAATAAGCCGCCAGTGCAAAACGATCTATTTGAACAAATTGATTGCAAAGAAGAATTGCCATTTCCTCAGCTG
TTAGCTAACGTAGGAAGTAAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTGCATGAAGTCATGAT
GCAGCTCTTGGAGCTTGAGCTCTCAGGGCATGTTGTTGCGGTTTCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(79-278)

DprA winged helix domain (DprA_WH)

(319-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

63.488

98.922

0.628
  dprA Vibrio cholerae strain A1552

58.221

100

0.582
  dprA Glaesserella parasuis strain SC1401

45.213

100

0.458
  dprA Legionella pneumophila strain ERS1305867

44.011

96.765

0.426
  dprA Neisseria meningitidis MC58

38.035

100

0.407
  dprA Neisseria meningitidis strain C311

38.035

100

0.407
  dprA Haemophilus influenzae Rd KW20

41.399

92.453

0.383
  dprA Acinetobacter baumannii D1279779

42.138

85.714

0.361