Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   J4N44_RS04555 Genome accession   NZ_CP071852
Coordinates   978000..978299 (+) Length   99 a.a.
NCBI ID   WP_005446580.1    Uniprot ID   A0A3A1QB85
Organism   Vibrio sp. SCSIO 43155     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 973000..983299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N44_RS04545 (J4N44_04535) - 975507..975779 (+) 273 WP_005430934.1 HU family DNA-binding protein -
  J4N44_RS04550 (J4N44_04540) ppiD 975995..977854 (+) 1860 WP_252044886.1 peptidylprolyl isomerase -
  J4N44_RS04555 (J4N44_04545) comEA 978000..978299 (+) 300 WP_005446580.1 helix-hairpin-helix domain-containing protein Machinery gene
  J4N44_RS04560 (J4N44_04550) rrtA 978452..979003 (-) 552 WP_017818999.1 rhombosortase -
  J4N44_RS04565 (J4N44_04555) - 979007..979624 (+) 618 WP_005446584.1 tRNA-uridine aminocarboxypropyltransferase -
  J4N44_RS04570 (J4N44_04560) - 979675..981009 (-) 1335 WP_252045079.1 anti-phage deoxyguanosine triphosphatase -
  J4N44_RS04575 (J4N44_04565) yfbR 981013..981597 (-) 585 WP_005425568.1 5'-deoxynucleotidase -
  J4N44_RS04580 (J4N44_04570) - 981681..982895 (-) 1215 WP_252044887.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10936.80 Da        Isoelectric Point: 8.9385

>NTDB_id=548359 J4N44_RS04555 WP_005446580.1 978000..978299(+) (comEA) [Vibrio sp. SCSIO 43155]
MKWMLTLCLLLLAPMSWAEESKSANTKAAKYEGIEITVNVNTASAQEIATMLKGIGEKKAKDIVEYRNEHGPFKTVADLT
KVKGIGDATVKKNEERILL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=548359 J4N44_RS04555 WP_005446580.1 978000..978299(+) (comEA) [Vibrio sp. SCSIO 43155]
ATGAAATGGATGTTAACACTGTGCTTATTACTCTTAGCACCGATGAGCTGGGCAGAAGAGAGTAAGTCGGCTAACACAAA
AGCAGCTAAGTACGAAGGTATCGAGATTACGGTAAACGTAAATACAGCTTCAGCGCAAGAGATTGCCACCATGCTAAAGG
GTATTGGTGAAAAGAAAGCGAAAGATATCGTCGAATATCGTAATGAACACGGTCCTTTTAAAACCGTTGCGGATCTGACC
AAAGTGAAGGGCATTGGCGATGCCACGGTGAAAAAGAATGAAGAGCGTATTTTGTTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3A1QB85

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio campbellii strain DS40M4

82.828

100

0.828
  comEA Vibrio parahaemolyticus RIMD 2210633

75.758

100

0.758
  comEA Vibrio cholerae C6706

56.566

100

0.566
  comEA Vibrio cholerae strain A1552

56.566

100

0.566
  comE1/comEA Haemophilus influenzae Rd KW20

41.071

100

0.465
  comEA/comE1 Glaesserella parasuis strain SC1401

39.252

100

0.424
  comEA Legionella pneumophila str. Paris

37.374

100

0.374
  comEA Legionella pneumophila strain ERS1305867

37.374

100

0.374