Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   J4N39_RS12310 Genome accession   NZ_CP071848
Coordinates   2614577..2615800 (+) Length   407 a.a.
NCBI ID   WP_252019849.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43136     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2609577..2620800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N39_RS12285 (J4N39_12295) pdhR 2609606..2610373 (-) 768 WP_252019833.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -
  J4N39_RS12290 (J4N39_12300) ampD 2610667..2611212 (-) 546 WP_252019835.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  J4N39_RS12295 (J4N39_12305) nadC 2611373..2612260 (+) 888 WP_252019837.1 carboxylating nicotinate-nucleotide diphosphorylase -
  J4N39_RS12300 (J4N39_12310) pilA 2612476..2612889 (+) 414 WP_252019839.1 pilin Machinery gene
  J4N39_RS12305 (J4N39_12315) pilB 2612893..2614569 (+) 1677 WP_252019841.1 type IV-A pilus assembly ATPase PilB Machinery gene
  J4N39_RS12310 (J4N39_12320) pilC 2614577..2615800 (+) 1224 WP_252019849.1 type II secretion system F family protein Machinery gene
  J4N39_RS12315 (J4N39_12325) pilD 2615831..2616706 (+) 876 WP_252019851.1 A24 family peptidase Machinery gene
  J4N39_RS12320 (J4N39_12330) coaE 2616709..2617314 (+) 606 WP_252019857.1 dephospho-CoA kinase -
  J4N39_RS12325 (J4N39_12335) zapD 2617368..2618108 (+) 741 WP_252019859.1 cell division protein ZapD -
  J4N39_RS12330 (J4N39_12340) yacG 2618114..2618308 (+) 195 WP_252019861.1 DNA gyrase inhibitor YacG -
  J4N39_RS12335 (J4N39_12345) mutT 2618421..2618822 (-) 402 WP_252019863.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45557.78 Da        Isoelectric Point: 10.1642

>NTDB_id=548301 J4N39_RS12310 WP_252019849.1 2614577..2615800(+) (pilC) [Vibrio sp. SCSIO 43136]
MVREKQKMRSFRWQGINSAGKKVSGECLCFSEHEVRIQLSEQKIQLRKLRKKNLSSFSQLSHRVKAKDIMLFTRQMATML
ATGISLVQALDLIADSHHKAEMKNLLRKLRRAVEAGTPISKAMRTSSPFFDSFYVDMLKTGEQTGNLSKAFERLAEYLEK
SAQLKAKVIKAMIYPAMVMLAAIGVTYLMLTMVIPEFEKMFTNMNATLPWFTEKILTLSHWVQSYGAYLLLGLIITILGT
KKACQQWSDFHHGLSKLSFRLPIFGDVMIKASIAKFARTLATSFTAGVPILTGLQSSARTANNPVFYRALQQVHQETAAG
TPFYLAIRHCGAFPKLVEQMVMIGETSGQLDDMLNKVANLYEDQVDDTVDNLGKLLEPLIIMVLGGLVGGLVVAMYLPIF
NLMNVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=548301 J4N39_RS12310 WP_252019849.1 2614577..2615800(+) (pilC) [Vibrio sp. SCSIO 43136]
ATGGTGAGAGAAAAGCAAAAAATGCGCAGCTTTCGCTGGCAAGGAATAAATTCTGCGGGCAAAAAGGTGTCTGGAGAGTG
TTTGTGTTTTAGTGAACACGAAGTGCGAATCCAGCTTTCAGAACAAAAAATTCAGCTACGTAAATTGCGTAAGAAAAACC
TCTCTAGCTTTAGCCAGCTGAGTCATCGAGTGAAGGCCAAAGACATCATGCTGTTTACTCGCCAAATGGCGACTATGTTG
GCCACCGGAATATCATTAGTGCAAGCGCTTGATCTTATTGCCGATAGTCACCACAAAGCAGAAATGAAAAACCTGCTCAG
GAAGCTAAGACGAGCCGTTGAAGCTGGTACGCCAATCTCTAAAGCCATGCGAACCTCCAGCCCATTTTTTGACAGTTTTT
ACGTTGATATGCTCAAAACCGGAGAACAAACAGGTAACCTATCCAAAGCGTTTGAACGTCTTGCTGAATACTTAGAAAAG
AGCGCCCAACTTAAGGCCAAAGTGATAAAAGCGATGATCTACCCTGCGATGGTGATGCTCGCAGCTATTGGCGTCACTTA
CCTAATGCTCACCATGGTGATCCCAGAGTTCGAAAAAATGTTCACTAACATGAATGCAACCCTGCCATGGTTTACCGAGA
AAATCTTAACGCTGTCACATTGGGTCCAAAGTTACGGTGCTTATCTTTTACTCGGATTAATTATCACCATATTAGGCACG
AAAAAAGCCTGCCAACAATGGTCTGATTTTCATCATGGGTTAAGCAAGTTGAGCTTTAGACTGCCAATCTTTGGCGATGT
GATGATCAAGGCTTCAATAGCAAAATTTGCCCGCACACTCGCCACCAGCTTTACCGCAGGCGTGCCGATTTTAACTGGTC
TACAAAGCAGTGCTCGAACCGCAAACAACCCAGTGTTCTATCGAGCCTTGCAGCAAGTACACCAAGAAACCGCAGCAGGC
ACGCCCTTTTATTTAGCGATACGCCATTGTGGTGCCTTTCCTAAACTGGTTGAACAGATGGTGATGATTGGAGAAACCTC
TGGTCAGTTGGATGATATGCTCAACAAAGTGGCCAACCTCTATGAAGATCAGGTCGATGATACTGTCGATAACTTAGGCA
AACTTCTCGAACCGCTTATCATCATGGTATTAGGTGGATTAGTTGGAGGCCTAGTGGTCGCAATGTATCTGCCGATATTT
AACTTAATGAATGTATTAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

59.5

98.28

0.585
  pilC Vibrio campbellii strain DS40M4

58.354

98.526

0.575
  pilC Acinetobacter baylyi ADP1

40.494

99.509

0.403
  pilC Pseudomonas stutzeri DSM 10701

40.394

99.754

0.403
  pilC Acinetobacter baumannii D1279779

38.67

99.754

0.386
  pilG Neisseria gonorrhoeae MS11

37.065

98.771

0.366
  pilG Neisseria meningitidis 44/76-A

36.816

98.771

0.364