Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   J2887_RS17275 Genome accession   NZ_CP071785
Coordinates   3773456..3775534 (-) Length   692 a.a.
NCBI ID   WP_227176162.1    Uniprot ID   -
Organism   Marinobacter sp. CA1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3768456..3780534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J2887_RS17260 (J2887_17205) - 3770274..3771638 (-) 1365 WP_227172340.1 SPOR domain-containing protein -
  J2887_RS17265 (J2887_17210) aroB 3771677..3772774 (-) 1098 WP_227172342.1 3-dehydroquinate synthase -
  J2887_RS17270 (J2887_17215) aroK 3772767..3773333 (-) 567 WP_227172344.1 shikimate kinase AroK -
  J2887_RS17275 (J2887_17220) pilQ 3773456..3775534 (-) 2079 WP_227176162.1 type IV pilus secretin PilQ Machinery gene
  J2887_RS17280 (J2887_17225) - 3775601..3776149 (-) 549 WP_227172346.1 pilus assembly protein PilP -
  J2887_RS17285 (J2887_17230) - 3776152..3776763 (-) 612 WP_227172347.1 type 4a pilus biogenesis protein PilO -
  J2887_RS17290 (J2887_17235) - 3776760..3777326 (-) 567 WP_227172349.1 PilN domain-containing protein -
  J2887_RS17295 (J2887_17240) pilM 3777326..3778390 (-) 1065 WP_227172350.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 74131.95 Da        Isoelectric Point: 4.3089

>NTDB_id=547766 J2887_RS17275 WP_227176162.1 3773456..3775534(-) (pilQ) [Marinobacter sp. CA1]
MFRKVNVFAGAVTLGFMSSLAQAVTLEDVSFSALPGERTEVTLQFDGQPPEPTGYTIESPARIAIDLQDTDSGLESRSLS
LGNGNARSMTVVETKDRTRLIFNLVELRPYQASRNENSLVLVIGGDDGAAAGGSVARSSESASAASSRQGTSAGRGLAGV
DFRRGENGEGRVVVELGNSNSSVDLSELGGKIKLSIADTSVPEQLRRRLDVTDFATPVTRVDTYSEGDAAVVEIRPQGDY
DYIAYQSGSEFVVSVEQLTEEEAQTRREEKFPYSGEKLSLNFQNIEVRSVLQLIADFTGLNLVASDTVSGSITLRLQNVP
WDQALDLILKTKGLDKRQIGNVLLVAPADEIAAREKLELETNKQIAELAPVRLDIIQINYAKAADIVALISEDEELISER
GFISSDVRTNTISVRETAEKLEEMRRLISTWDIPVRQVSIEARIVRAETNVAENLGIRWGGAAYDVNGDNVVSIGGSLGT
VEEARQAAGGGSGTITFPGALGVDLGVTGDGASSFAIGFGSSDFLVDMEISALASDGKAEVVSQPRVVTADRQTAKIKSG
EEIPYQEASSSGATSVSFKEAALSLEVTPQITPDDKVIMDLTVNQDSRGEVTAGIPSINTNEVTTQVLVGNGETVVLGGI
FQSETATTTTKTPFLGDIPYLGRLFKRTVQTDERSELLIFITPKIMKNDLIR

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=547766 J2887_RS17275 WP_227176162.1 3773456..3775534(-) (pilQ) [Marinobacter sp. CA1]
ATGTTCAGAAAAGTCAACGTATTTGCCGGTGCAGTAACGCTCGGATTCATGTCCAGCCTGGCACAAGCGGTTACTCTGGA
AGATGTCTCGTTTTCGGCGCTCCCGGGGGAACGAACGGAGGTCACACTTCAGTTTGACGGTCAGCCTCCGGAGCCGACGG
GCTACACAATTGAAAGCCCGGCCAGGATAGCTATTGATCTCCAAGACACTGACAGCGGTCTGGAGTCGCGCTCATTGTCC
CTTGGAAACGGGAATGCGCGCAGTATGACTGTCGTGGAAACAAAAGATCGGACTAGGCTGATTTTTAACTTGGTTGAGCT
GCGCCCCTACCAGGCGTCCCGTAATGAGAACTCCCTCGTTCTGGTTATTGGTGGCGATGATGGTGCAGCCGCTGGGGGCT
CTGTTGCTCGTTCATCAGAGTCAGCTTCGGCGGCCTCGTCTCGGCAGGGGACAAGTGCCGGTCGAGGGTTAGCTGGCGTT
GATTTCCGTCGTGGGGAGAATGGCGAAGGGCGTGTTGTCGTTGAACTGGGGAATTCAAACAGTTCCGTCGACCTCTCGGA
GCTTGGGGGCAAAATCAAGCTTTCCATTGCCGACACTTCGGTACCGGAGCAACTCCGTCGTCGGTTGGATGTTACTGATT
TTGCAACGCCGGTAACGCGGGTGGACACCTACTCAGAAGGAGACGCCGCTGTTGTGGAAATCCGCCCTCAGGGTGACTAC
GACTATATCGCTTATCAATCCGGTAGCGAGTTTGTGGTGAGCGTCGAGCAGCTCACGGAAGAGGAGGCTCAGACTCGTCG
TGAGGAAAAGTTCCCTTACTCGGGCGAGAAACTGTCGTTAAACTTCCAGAATATTGAGGTTCGATCTGTCCTCCAGTTGA
TTGCGGATTTCACCGGACTCAACCTTGTTGCCAGTGATACAGTCTCTGGAAGTATCACTCTCCGACTTCAGAATGTTCCG
TGGGACCAGGCTTTGGACTTGATCCTGAAAACAAAAGGATTGGATAAGCGTCAGATTGGCAATGTGCTGCTTGTTGCGCC
AGCCGATGAAATCGCAGCCAGGGAGAAGCTGGAGCTTGAGACCAACAAACAGATTGCTGAGCTGGCGCCAGTTCGACTGG
ATATTATCCAGATCAATTATGCGAAGGCCGCAGATATCGTTGCTTTGATCAGTGAGGATGAGGAGCTGATTTCAGAGCGA
GGCTTCATTTCATCAGATGTACGAACCAATACCATCAGTGTAAGAGAAACGGCTGAGAAGCTGGAAGAAATGCGCCGATT
GATCAGCACCTGGGACATTCCTGTTCGACAAGTGTCTATTGAGGCGCGGATTGTTCGGGCGGAAACCAATGTAGCTGAGA
ATCTGGGGATTCGCTGGGGTGGAGCTGCCTACGATGTTAATGGCGACAATGTGGTTTCTATTGGTGGGTCGCTTGGTACC
GTAGAAGAGGCGCGTCAGGCTGCCGGAGGCGGTTCTGGAACCATTACATTCCCCGGTGCATTGGGCGTTGACCTCGGTGT
TACTGGCGATGGCGCGTCATCCTTTGCGATAGGCTTTGGCAGCAGCGACTTCCTGGTTGATATGGAGATCTCTGCCCTGG
CTTCTGATGGTAAGGCCGAAGTGGTTTCCCAGCCTCGGGTTGTAACCGCTGATCGGCAGACTGCGAAAATCAAGTCTGGC
GAAGAGATTCCTTATCAGGAGGCTTCATCCAGCGGTGCGACCTCGGTTTCTTTCAAGGAGGCAGCGCTGTCTTTGGAAGT
TACTCCGCAGATTACCCCGGATGACAAGGTCATCATGGATCTTACCGTAAACCAGGATTCCCGGGGCGAGGTAACGGCCG
GCATCCCTTCAATCAATACCAATGAGGTGACAACTCAGGTACTGGTTGGCAATGGGGAAACGGTTGTGCTTGGCGGTATT
TTTCAGTCTGAGACAGCGACGACCACAACCAAGACACCATTCCTGGGGGATATCCCATACTTGGGTCGCTTGTTCAAGCG
AACTGTTCAGACCGATGAACGCAGCGAGCTCCTCATCTTCATCACCCCGAAGATTATGAAGAACGACCTCATCCGCTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(301-347)

Bacterial type II/III secretion system short domain (Secretin_N)

(375-437)

AMIN domain (AMIN)

(38-122)

Bacterial type II and III secretion system protein (Secretin)

(532-687)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

51.739

99.711

0.516
  pilQ Acinetobacter baumannii D1279779

40.054

100

0.425
  pilQ Acinetobacter baumannii strain A118

40.054

100

0.425
  comQ Acinetobacter baylyi ADP1

40.563

100

0.416
  pilQ Legionella pneumophila strain Lp02

40.943

98.121

0.402
  pilQ Legionella pneumophila strain ERS1305867

40.943

98.121

0.402