Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   H020_RS0110660 Genome accession   NZ_AKVY01000001
Coordinates   2000073..2000477 (-) Length   134 a.a.
NCBI ID   WP_224781841.1    Uniprot ID   -
Organism   Streptococcus pneumoniae TIGR4     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1995073..2005477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H020_RS0110630 - 1995382..1996257 (+) 876 WP_000669493.1 substrate-binding domain-containing protein -
  H020_RS0110635 pstC 1996375..1997238 (+) 864 WP_000165887.1 phosphate ABC transporter permease subunit PstC -
  H020_RS0110640 pstA 1997231..1998046 (+) 816 WP_000049768.1 phosphate ABC transporter permease PstA -
  H020_RS0110645 pstB 1998048..1998800 (+) 753 WP_000536449.1 phosphate ABC transporter ATP-binding protein PstB -
  H020_RS0110650 phoU 1998815..1999465 (+) 651 WP_001245781.1 phosphate signaling complex protein PhoU -
  H020_RS0110655 - 1999482..1999958 (+) 477 Protein_1979 transposase -
  H020_RS0110660 comR 2000073..2000477 (-) 405 WP_224781841.1 helix-turn-helix domain-containing protein Regulator
  H020_RS0110665 - 2000725..2001741 (+) 1017 WP_000415103.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  H020_RS0110670 galU 2001763..2002662 (+) 900 WP_000202234.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  H020_RS0110675 - 2003080..2004021 (+) 942 WP_000428163.1 hypothetical protein -
  H020_RS14430 - 2004123..2004308 (-) 186 WP_000693096.1 hypothetical protein -
  H020_RS0110685 - 2004322..2004999 (-) 678 WP_000658497.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 16159.57 Da        Isoelectric Point: 4.5898

>NTDB_id=54739 H020_RS0110660 WP_224781841.1 2000073..2000477(-) (comR) [Streptococcus pneumoniae TIGR4]
MAKKISRSEFCGDESELSIRQLIRIENGESRPILTKLKYIAERLGVEDYKLMPSYIELDKEYLELKYFLMRTPTYEDETI
AQKKESVFDKIFEEYYDRLPEEERFIIPNYSYLALTNYTVQKLPEKLVEILSFW

Nucleotide


Download         Length: 405 bp        

>NTDB_id=54739 H020_RS0110660 WP_224781841.1 2000073..2000477(-) (comR) [Streptococcus pneumoniae TIGR4]
TTGGCTAAAAAAATCAGTCGTTCAGAATTTTGTGGTGATGAGTCTGAATTAAGTATCCGTCAATTAATTAGAATTGAAAA
TGGAGAATCCAGACCAATACTAACAAAGTTAAAATATATTGCTGAACGTTTGGGGGTTGAAGATTACAAGTTGATGCCAA
GTTATATAGAGTTGGATAAGGAATACCTAGAATTGAAGTATTTCTTGATGAGGACTCCTACATACGAAGATGAAACTATC
GCCCAAAAGAAAGAGAGTGTTTTTGATAAGATTTTTGAAGAGTATTATGATAGGCTACCTGAGGAAGAAAGATTTATCAT
CCCAAATTATTCATATCTGGCACTAACGAACTACACAGTTCAAAAATTACCAGAAAAGCTAGTTGAAATACTGTCCTTCT
GGTGA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(60-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus pyogenes MGAS8232

54.63

80.597

0.44
  comR Streptococcus infantarius subsp. infantarius ATCC BAA-102

55.66

79.104

0.44
  comR Streptococcus pyogenes MGAS315

52.778

80.597

0.425
  comR Streptococcus mutans UA159

50.926

80.597

0.41
  comR Streptococcus suis P1/7

48.113

79.104

0.381
  comR Streptococcus suis 05ZYH33

48.113

79.104

0.381
  comR Streptococcus suis D9

47.17

79.104

0.373
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

48.039

76.119

0.366

Multiple sequence alignment