Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   LEPTO7376_RS13010 Genome accession   NC_019683
Coordinates   2913874..2914239 (+) Length   121 a.a.
NCBI ID   WP_015134635.1    Uniprot ID   -
Organism   [Leptolyngbya] sp. PCC 7376     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2908874..2919239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEPTO7376_RS12995 (Lepto7376_2606) - 2908903..2909808 (+) 906 WP_015134632.1 phosphoribulokinase -
  LEPTO7376_RS13000 (Lepto7376_2607) hmpF 2909981..2911720 (-) 1740 WP_015134633.1 pilus motility taxis protein HmpF -
  LEPTO7376_RS13005 (Lepto7376_2608) - 2912384..2913625 (+) 1242 WP_015134634.1 response regulator -
  LEPTO7376_RS13010 (Lepto7376_2609) pilH 2913874..2914239 (+) 366 WP_015134635.1 response regulator transcription factor Machinery gene
  LEPTO7376_RS13015 (Lepto7376_2610) - 2914368..2914898 (+) 531 WP_015134636.1 chemotaxis protein CheW -
  LEPTO7376_RS13020 (Lepto7376_2611) - 2915057..2918149 (+) 3093 WP_015134637.1 methyl-accepting chemotaxis protein -
  LEPTO7376_RS13025 (Lepto7376_2612) - 2918262..2919056 (+) 795 WP_015134638.1 MlaE family lipid ABC transporter permease subunit -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13532.83 Da        Isoelectric Point: 5.2582

>NTDB_id=54725 LEPTO7376_RS13010 WP_015134635.1 2913874..2914239(+) (pilH) [[Leptolyngbya] sp. PCC 7376]
MSKILVVEDSISQREMISELLKGSGLKVEVAGDGVEALENLKQFQPDLIVLDIVMPRMNGYELCRKIKSDPKTKDVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPAELIGTIKQLLRS

Nucleotide


Download         Length: 366 bp        

>NTDB_id=54725 LEPTO7376_RS13010 WP_015134635.1 2913874..2914239(+) (pilH) [[Leptolyngbya] sp. PCC 7376]
ATGAGTAAAATTTTGGTCGTTGAAGACAGCATCTCTCAAAGAGAAATGATTTCAGAACTGCTCAAAGGAAGTGGTTTGAA
AGTCGAAGTAGCAGGGGATGGTGTCGAGGCGCTAGAAAATTTAAAGCAGTTCCAACCTGACCTTATCGTTTTGGATATTG
TCATGCCTCGTATGAATGGCTATGAGCTGTGCCGCAAAATTAAATCTGATCCGAAAACAAAGGATGTTCCTGTGGTGATG
TGTTCTTCAAAAGGTGAAGAATTTGACCGATATTGGGGCATGAAGCAAGGGGCTGATGCTTATATTGCAAAGCCGTTTCA
GCCTGCAGAATTGATCGGTACGATTAAGCAATTACTGCGGAGTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.86

100

0.769
  micA Streptococcus pneumoniae Cp1015

40.833

99.174

0.405
  pilL-C Synechocystis sp. PCC 6803

39.167

99.174

0.388
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  pilG Acinetobacter baumannii strain A118

38.655

98.347

0.38
  chpA Acinetobacter baumannii strain A118

38.793

95.868

0.372

Multiple sequence alignment