Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JYB87_RS01790 Genome accession   NZ_CP071503
Coordinates   399620..400891 (-) Length   423 a.a.
NCBI ID   WP_207355214.1    Uniprot ID   -
Organism   Shewanella avicenniae strain FJAT-51800     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 394620..405891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYB87_RS01760 (JYB87_01760) - 394825..396552 (+) 1728 WP_207355208.1 PglL family O-oligosaccharyltransferase -
  JYB87_RS01765 (JYB87_01765) mutT 396633..397043 (-) 411 WP_207355209.1 8-oxo-dGTP diphosphatase MutT -
  JYB87_RS01770 (JYB87_01770) yacG 397070..397279 (-) 210 WP_207355210.1 DNA gyrase inhibitor YacG -
  JYB87_RS01775 (JYB87_01775) zapD 397329..398045 (-) 717 WP_207355211.1 cell division protein ZapD -
  JYB87_RS01780 (JYB87_01780) coaE 398038..398658 (-) 621 WP_207355212.1 dephospho-CoA kinase -
  JYB87_RS01785 (JYB87_01785) pilD 398658..399572 (-) 915 WP_207355213.1 A24 family peptidase Machinery gene
  JYB87_RS01790 (JYB87_01790) pilC 399620..400891 (-) 1272 WP_207355214.1 type II secretion system F family protein Machinery gene
  JYB87_RS01795 (JYB87_01795) pilB 401015..402721 (-) 1707 WP_207355215.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JYB87_RS18805 (JYB87_01800) - 402789..403160 (-) 372 WP_207355216.1 type IV pilin protein -
  JYB87_RS01805 (JYB87_01805) nadC 403969..404829 (-) 861 WP_207355217.1 carboxylating nicotinate-nucleotide diphosphorylase -
  JYB87_RS01810 (JYB87_01810) ampD 405103..405696 (+) 594 WP_207355218.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46192.37 Da        Isoelectric Point: 10.1920

>NTDB_id=545737 JYB87_RS01790 WP_207355214.1 399620..400891(-) (pilC) [Shewanella avicenniae strain FJAT-51800]
MATASSTRKRNGAKAKEKKQPTIYTFVWKGVNRDGKKSEGELRGATVAEIKQQLKNQGINPKTVTKKSAGLFSNENKKIT
AMDIAMVTRQIATMLSAGVPLVTSIELISRGHEKPKMRTLLGTILSDVQSGIPLSDSLRPHRIYFDDLYVDLVAAGEHSG
SLDIVFDRIATYKEKAEALKSKIKKAMFYPAAVIVVAIAVTVLLLLFVVPQFEEIFSSFGAELPAFTQLIVNISRGLQST
WYIFLAAIVLAVWLFVRAHRNSQKFRDKIDELVLKIPVIGDILHKGAMARFARTLATTFAAGVPLIDGLTSAAGASGNAV
YRKSLMNVRTEVMAGMQMNVAMRTSKLFPDMLIQMVMIGEESGSLDNMLNKIANIYEMQVDDAVDALSSLIEPMMMVVIG
GLVGSLIVGMYLPIFQLGNVVSG

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=545737 JYB87_RS01790 WP_207355214.1 399620..400891(-) (pilC) [Shewanella avicenniae strain FJAT-51800]
ATGGCAACCGCCTCTTCTACCCGTAAGCGCAATGGCGCAAAAGCCAAAGAAAAAAAGCAGCCCACTATCTATACCTTTGT
TTGGAAAGGTGTAAATCGCGACGGAAAAAAAAGTGAGGGAGAACTCCGTGGTGCGACCGTTGCAGAAATTAAGCAACAGT
TAAAAAATCAAGGAATTAATCCTAAAACTGTCACCAAAAAGTCCGCAGGACTTTTCAGCAACGAGAATAAAAAAATCACC
GCAATGGACATCGCAATGGTGACCCGTCAAATAGCAACTATGCTTTCTGCCGGGGTGCCTTTGGTGACTTCGATTGAGCT
TATTTCCCGTGGTCATGAAAAACCAAAGATGCGTACCTTGTTAGGGACAATTTTGTCAGATGTGCAATCTGGTATTCCGC
TTTCTGACTCACTTCGCCCTCACAGAATTTATTTCGATGATCTATACGTAGACCTTGTCGCCGCAGGTGAACACTCTGGC
TCTTTAGATATTGTATTTGACCGTATCGCCACCTATAAAGAGAAGGCGGAAGCACTGAAATCAAAAATTAAAAAGGCAAT
GTTTTATCCTGCGGCCGTGATTGTTGTAGCCATCGCAGTTACCGTATTGCTACTTTTGTTCGTTGTCCCCCAGTTTGAAG
AAATATTTAGCAGTTTTGGCGCTGAGCTACCCGCATTTACCCAACTTATTGTGAATATTTCGCGTGGATTACAGAGCACT
TGGTACATATTTCTAGCAGCAATCGTCCTCGCGGTTTGGTTATTTGTCAGAGCACATCGTAATTCTCAAAAGTTTAGAGA
CAAGATTGATGAACTTGTATTAAAAATCCCAGTCATTGGAGATATTCTGCACAAAGGTGCAATGGCACGATTTGCTCGCA
CCTTGGCAACCACCTTCGCGGCAGGTGTTCCTTTGATTGACGGCTTAACCTCCGCCGCAGGAGCATCAGGCAATGCCGTC
TACCGTAAGTCTCTCATGAATGTACGCACTGAAGTGATGGCTGGTATGCAAATGAACGTGGCAATGCGCACGTCTAAGCT
ATTCCCAGATATGTTGATTCAGATGGTGATGATTGGTGAAGAATCTGGCTCTCTTGATAATATGCTTAATAAAATTGCTA
ACATCTATGAAATGCAGGTCGATGATGCCGTGGATGCCCTATCCAGCCTGATTGAGCCGATGATGATGGTGGTTATTGGC
GGTTTGGTCGGTAGCTTAATTGTCGGCATGTATTTGCCGATATTCCAGTTGGGCAATGTTGTTAGCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.556

93.617

0.52
  pilC Acinetobacter baylyi ADP1

50.864

95.745

0.487
  pilC Acinetobacter baumannii D1279779

50.245

96.454

0.485
  pilC Legionella pneumophila strain ERS1305867

49.877

95.745

0.478
  pilC Vibrio cholerae strain A1552

44.332

93.853

0.416
  pilC Vibrio campbellii strain DS40M4

43.424

95.272

0.414
  pilG Neisseria meningitidis 44/76-A

42.402

96.454

0.409
  pilG Neisseria gonorrhoeae MS11

42.402

96.454

0.409