Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   J0B03_RS06910 Genome accession   NZ_CP071444
Coordinates   1380144..1380590 (-) Length   148 a.a.
NCBI ID   WP_207298908.1    Uniprot ID   A0A974XDC2
Organism   Alkalibacter rhizosphaerae strain ES005     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1375144..1385590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0B03_RS06890 (J0B03_06890) dnaB 1376014..1377354 (-) 1341 WP_207298904.1 replicative DNA helicase -
  J0B03_RS06895 (J0B03_06895) rplI 1377369..1377815 (-) 447 WP_207298905.1 50S ribosomal protein L9 -
  J0B03_RS06900 (J0B03_06900) - 1377830..1379791 (-) 1962 WP_207298906.1 DHH family phosphoesterase -
  J0B03_RS06905 (J0B03_06905) rpsR 1379900..1380127 (-) 228 WP_207298907.1 30S ribosomal protein S18 -
  J0B03_RS06910 (J0B03_06910) ssbA 1380144..1380590 (-) 447 WP_207298908.1 single-stranded DNA-binding protein Machinery gene
  J0B03_RS06915 (J0B03_06915) rpsF 1380606..1380893 (-) 288 WP_207298909.1 30S ribosomal protein S6 -
  J0B03_RS06920 (J0B03_06920) - 1380995..1381192 (-) 198 WP_207298910.1 DUF951 domain-containing protein -
  J0B03_RS06925 (J0B03_06925) - 1381222..1381857 (-) 636 WP_207298911.1 CvpA family protein -
  J0B03_RS06930 (J0B03_06930) - 1381872..1382381 (-) 510 WP_207298912.1 hypothetical protein -
  J0B03_RS06935 (J0B03_06935) - 1382426..1383280 (-) 855 WP_207298913.1 ParB/RepB/Spo0J family partition protein -
  J0B03_RS06940 (J0B03_06940) - 1383277..1384050 (-) 774 WP_207298914.1 ParA family protein -
  J0B03_RS06945 (J0B03_06945) noc 1384151..1384960 (-) 810 WP_207298915.1 nucleoid occlusion protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16402.02 Da        Isoelectric Point: 4.5605

>NTDB_id=545352 J0B03_RS06910 WP_207298908.1 1380144..1380590(-) (ssbA) [Alkalibacter rhizosphaerae strain ES005]
MNKVVLVGRLTKDIELRYTQKGTAVASFTIAIDRRFKNQNGEKETDFINCVAWGAQGETASKYVGKGSQIGVCGRIQTRS
YEANDGGRRYVTEVVCEEIEFLSSGGNQNRSGGYSPAKQDQNRNSNSDFGVPMDDFQPLEDDDDDLPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=545352 J0B03_RS06910 WP_207298908.1 1380144..1380590(-) (ssbA) [Alkalibacter rhizosphaerae strain ES005]
ATGAACAAAGTCGTACTCGTAGGTCGCTTGACAAAAGATATTGAATTAAGGTATACCCAAAAGGGCACAGCAGTGGCGTC
TTTTACCATTGCCATCGATCGTCGTTTTAAAAATCAAAACGGCGAAAAAGAAACGGATTTTATCAACTGTGTCGCCTGGG
GCGCACAGGGCGAGACCGCTTCGAAATATGTGGGTAAAGGCAGCCAAATAGGTGTATGCGGACGGATTCAAACAAGATCT
TACGAAGCAAACGATGGAGGAAGAAGATACGTTACCGAAGTCGTATGTGAAGAAATTGAATTCCTGAGTTCTGGTGGAAA
TCAGAACCGTTCCGGCGGGTATTCCCCGGCAAAACAGGATCAAAATCGAAACAGCAATTCGGATTTTGGCGTTCCAATGG
ATGATTTTCAACCGTTGGAAGACGATGATGACGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

44.253

100

0.52
  ssb Latilactobacillus sakei subsp. sakei 23K

42.012

100

0.48
  ssbA Streptococcus mutans UA159

38.095

99.324

0.378
  ssb Vibrio cholerae strain A1552

31.792

100

0.372
  ssb Neisseria meningitidis MC58

31.609

100

0.372
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.465

68.243

0.365
  ssb Neisseria gonorrhoeae MS11

31.034

100

0.365