Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FH974_RS15725 Genome accession   NZ_CP071325
Coordinates   3466676..3467770 (-) Length   364 a.a.
NCBI ID   WP_047887467.1    Uniprot ID   A0A0J1GZF7
Organism   Photobacterium ganghwense strain C2.2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3461676..3472770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH974_RS15695 (FH974_15695) hemF 3462160..3463065 (-) 906 WP_047887461.1 oxygen-dependent coproporphyrinogen oxidase -
  FH974_RS15700 (FH974_15700) tsaC 3463072..3463629 (-) 558 WP_207103413.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  FH974_RS15705 (FH974_15705) purE 3463832..3464323 (+) 492 WP_047887463.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  FH974_RS15710 (FH974_15710) - 3464320..3465435 (+) 1116 WP_047887464.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  FH974_RS15715 (FH974_15715) - 3465557..3466165 (-) 609 WP_047887465.1 type I DNA topoisomerase -
  FH974_RS15720 (FH974_15720) - 3466200..3466673 (-) 474 WP_047887466.1 DUF494 family protein -
  FH974_RS15725 (FH974_15725) dprA 3466676..3467770 (-) 1095 WP_047887467.1 DNA-processing protein DprA Machinery gene
  FH974_RS15730 (FH974_15730) - 3467789..3468847 (-) 1059 WP_047887468.1 LysM peptidoglycan-binding domain-containing protein -
  FH974_RS15735 (FH974_15735) def 3469135..3469653 (+) 519 WP_047887469.1 peptide deformylase -
  FH974_RS15740 (FH974_15740) fmt 3469682..3470632 (+) 951 WP_047887470.1 methionyl-tRNA formyltransferase -
  FH974_RS15745 (FH974_15745) rsmB 3470766..3472049 (+) 1284 WP_207103414.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 38927.77 Da        Isoelectric Point: 6.5882

>NTDB_id=545069 FH974_RS15725 WP_047887467.1 3466676..3467770(-) (dprA) [Photobacterium ganghwense strain C2.2]
MTALVDWLVLASAPGLGGVRISRILEHVTPAALRAMSAEELTGIGMTPRQVSHFRQPPMAKIDRCLRWDSQPGQTILTLD
SSHYPALLKEIASPPPLLFVRGEPHWLLQPQLAIVGSRSASIDGREAAYEFAAALVAAEYVVTSGLALGVDGQAHYGALK
NGGATVAVLGSGLDRIYPAKHRELASLITQQGALVSEFWPDEVPRPQNFPRRNRVISGLSVGVLVIEAAQKSGSLITARY
ALEQGREVFALPGPIHYPGSRGCHALIKNGAKLVETPVDIFEEVGALTSCVKNSHSDESLAQPENEKLPFPALLANVGSE
ATPVDVVAERSGQPVQEVMMQLLELELLGMVTAVPGGYIRARRG

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=545069 FH974_RS15725 WP_047887467.1 3466676..3467770(-) (dprA) [Photobacterium ganghwense strain C2.2]
ATGACGGCATTAGTTGACTGGTTGGTTCTGGCGTCTGCACCGGGTCTGGGCGGCGTCAGGATCAGCCGTATCTTGGAACA
TGTGACTCCGGCAGCCCTGCGTGCGATGTCGGCCGAAGAGCTGACGGGCATCGGTATGACTCCCCGCCAAGTGAGTCACT
TTCGCCAGCCTCCGATGGCAAAAATTGATCGTTGCCTGCGTTGGGACAGCCAGCCGGGCCAGACTATACTCACCTTAGAT
TCTTCTCATTACCCTGCTTTACTTAAAGAAATCGCTTCACCTCCTCCTTTATTGTTTGTCCGGGGAGAGCCGCACTGGTT
GCTGCAGCCACAGCTGGCTATTGTCGGCAGCCGCTCAGCCAGTATCGACGGTCGGGAAGCGGCTTATGAATTTGCGGCTG
CGCTGGTAGCGGCCGAGTATGTGGTGACCAGCGGATTGGCGTTGGGGGTGGATGGTCAGGCGCATTACGGAGCGCTGAAA
AATGGCGGGGCCACAGTAGCGGTACTGGGCTCGGGCCTTGATCGGATCTACCCGGCCAAACACCGTGAGTTGGCGAGCCT
GATTACGCAGCAAGGGGCGCTGGTCTCTGAATTCTGGCCGGATGAAGTGCCTCGGCCGCAGAACTTTCCGCGTCGCAACC
GAGTGATCAGCGGACTGTCGGTCGGCGTACTGGTGATAGAGGCGGCGCAGAAAAGTGGATCGCTGATTACGGCGCGGTAT
GCCTTAGAGCAAGGGCGGGAAGTTTTTGCCCTGCCCGGCCCGATTCATTATCCCGGGAGCCGAGGCTGCCATGCCCTGAT
AAAAAATGGTGCCAAACTGGTCGAAACACCGGTCGATATCTTTGAAGAAGTCGGGGCGCTGACAAGCTGCGTAAAAAATA
GCCATTCGGATGAATCGCTCGCACAACCTGAAAATGAAAAATTGCCATTTCCAGCGCTGTTGGCTAACGTAGGCAGTGAG
GCAACACCCGTAGATGTAGTTGCTGAGCGCAGTGGGCAACCTGTTCAGGAAGTCATGATGCAGTTACTTGAACTGGAACT
GCTCGGGATGGTCACTGCTGTACCAGGTGGCTATATCAGAGCGAGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-275)

DprA winged helix domain (DprA_WH)

(312-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J1GZF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

55.525

99.451

0.552
  dprA Vibrio cholerae strain A1552

51.366

100

0.516
  dprA Glaesserella parasuis strain SC1401

46.113

100

0.473
  dprA Legionella pneumophila strain ERS1305867

49.186

84.341

0.415
  dprA Haemophilus influenzae Rd KW20

44.444

91.484

0.407
  dprA Neisseria gonorrhoeae strain FA1090

41.379

87.637

0.363
  dprA Neisseria meningitidis strain C311

41.121

88.187

0.363
  dprA Neisseria meningitidis MC58

41.121

88.187

0.363