NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	J0J32_RS01825	Genome accession	NZ_CP071285
Coordinates	371467..372066 (-)	Length	199 a.a.
NCBI ID	WP_003134020.1	Uniprot ID	-
Organism	Lactococcus garvieae strain LG728
Function	degradation of ComX; degradation of ComW (predicted from homology) Competence regulation

Genomic Context

Location: 366467..377066

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J0J32_RS01815 (J0J32_01815)	-	366519..367742 (+)	1224	WP_003134018.1	FtsW/RodA/SpoVE family cell cycle protein	-
J0J32_RS01820 (J0J32_01820)	-	367943..371362 (+)	3420	WP_003134019.1	pyruvate carboxylase	-
J0J32_RS01825 (J0J32_01825)	clpP	371467..372066 (-)	600	WP_003134020.1	ATP-dependent Clp protease proteolytic subunit	Regulator
J0J32_RS01830 (J0J32_01830)	-	372243..372620 (+)	378	WP_003134021.1	VOC family protein	-
J0J32_RS01835 (J0J32_01835)	-	372680..373210 (+)	531	WP_003134023.1	hypothetical protein	-
J0J32_RS01840 (J0J32_01840)	spx	373373..373771 (+)	399	WP_003134024.1	transcriptional regulator Spx	-
J0J32_RS01845 (J0J32_01845)	-	373908..374678 (+)	771	WP_003134025.1	TatD family hydrolase	-
J0J32_RS01850 (J0J32_01850)	rnmV	374678..375223 (+)	546	WP_003134027.1	ribonuclease M5	-
J0J32_RS01855 (J0J32_01855)	-	375220..376146 (+)	927	WP_003134028.1	ABC transporter ATP-binding protein	-
J0J32_RS01860 (J0J32_01860)	-	376139..376909 (+)	771	WP_003134031.1	ABC transporter permease	-

Sequence

Protein

Download Length: 199 a.a. Molecular weight: 21787.90 Da Isoelectric Point: 4.7242

                                >NTDB_id=544577 J0J32_RS01825 WP_003134020.1 371467..372066(-) (clpP) [Lactococcus garvieae strain LG728]

MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGQVEDGMANSIIAQLLFLDAQDSTKDIYLYINTPGGSVSAGLAIVD

TMNFIKSDVQTIVMGIAASMGTIIASSGTKGKRFMLPHAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRRTLEKILAEN

SGQSMEKVHADAERDNWMTAQETLDYGFIDEIMEANSLK

Nucleotide

Download Length: 600 bp

                                >NTDB_id=544577 J0J32_RS01825 WP_003134020.1 371467..372066(-) (clpP) [Lactococcus garvieae strain LG728]

ATGGGATATTTAGTACCTACTGTCATCGAGCAATCAAGCCGTGGTGAACGTGCATATGACATTTATAGCCGTCTACTGAA

AGACCGTATCATCATGTTGACAGGCCAAGTTGAGGATGGTATGGCCAACTCAATCATCGCACAACTCCTCTTCTTGGATG

CCCAAGACAGCACAAAGGACATTTACCTCTACATTAACACACCTGGTGGTTCTGTTTCTGCTGGTCTTGCAATTGTCGAT

ACTATGAACTTCATCAAATCTGATGTTCAAACCATCGTTATGGGTATCGCTGCATCTATGGGTACAATCATTGCTTCTAG

TGGTACAAAAGGCAAACGTTTCATGTTGCCACATGCGGAATACATGATTCACCAACCTATGGGCGGTACTGGTGGTGGTA

CACAACAAACAGACATGGCTATCGCTGCGGAACATTTGCTCAAAACACGTCGTACTTTAGAAAAGATCTTGGCCGAAAAC

TCTGGACAATCTATGGAAAAAGTACATGCCGATGCAGAACGTGACAACTGGATGACAGCACAAGAAACATTAGATTATGG

TTTCATTGATGAAATCATGGAAGCCAACAGCTTGAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-195)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Streptococcus pneumoniae Rx1	89.796	98.492	0.884
clpP	Streptococcus pneumoniae D39	89.796	98.492	0.884
clpP	Streptococcus pneumoniae R6	89.796	98.492	0.884
clpP	Streptococcus pneumoniae TIGR4	89.796	98.492	0.884
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	87.94	100	0.879
clpP	Lactococcus lactis subsp. cremoris KW2	87.437	100	0.874
clpP	Streptococcus thermophilus LMG 18311	87.755	98.492	0.864
clpP	Streptococcus thermophilus LMD-9	87.755	98.492	0.864
clpP	Streptococcus pyogenes JRS4	84.184	98.492	0.829
clpP	Streptococcus pyogenes MGAS315	84.184	98.492	0.829
clpP	Streptococcus mutans UA159	84.184	98.492	0.829
clpP	Bacillus subtilis subsp. subtilis str. 168	58.421	95.477	0.558
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.995	96.985	0.553

Detailed information NTG0544577