Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   UC509_RS03390 Genome accession   NC_019435
Coordinates   657116..657715 (-) Length   199 a.a.
NCBI ID   WP_015082161.1    Uniprot ID   -
Organism   Lactococcus cremoris subsp. cremoris UC509.9     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 652116..662715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UC509_RS03380 (uc509_0665) acnA 653272..655818 (+) 2547 WP_015082159.1 aconitate hydratase AcnA -
  UC509_RS03385 (uc509_0666) icd 655838..657076 (+) 1239 WP_015082160.1 NADP-dependent isocitrate dehydrogenase -
  UC509_RS03390 (uc509_0667) clpP 657116..657715 (-) 600 WP_015082161.1 ATP-dependent Clp protease proteolytic subunit Regulator
  UC509_RS03395 (uc509_0668) - 657910..658440 (+) 531 WP_011675638.1 hypothetical protein -
  UC509_RS03400 (uc509_0669) spx 658610..659008 (+) 399 WP_015082162.1 transcriptional regulator Spx -
  UC509_RS13355 (uc509_0670) - 659159..659293 (-) 135 WP_014572996.1 hypothetical protein -
  UC509_RS03405 (uc509_0671) - 659390..660553 (-) 1164 WP_011675640.1 ABC transporter permease -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22078.25 Da        Isoelectric Point: 4.7423

>NTDB_id=54456 UC509_RS03390 WP_015082161.1 657116..657715(-) (clpP) [Lactococcus cremoris subsp. cremoris UC509.9]
MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGPVEDGMANSIIPQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVD
TMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGAGQGTQQTDMAIVAEQLLKTRKRLEQILADN
SNRSLEQIHKDAERDHWMDAKETLEYGFIDEIMENNSLK

Nucleotide


Download         Length: 600 bp        

>NTDB_id=54456 UC509_RS03390 WP_015082161.1 657116..657715(-) (clpP) [Lactococcus cremoris subsp. cremoris UC509.9]
ATGGGTTATTTAGTACCTACCGTTATTGAACAATCAAGCCGTGGTGAACGTGCTTATGATATTTATTCACGACTTTTAAA
AGACCGTATTATCATGCTGACAGGACCTGTTGAAGATGGTATGGCAAATTCTATCATTCCCCAACTTCTTTTCTTGGATG
CACAAGATAATACTAAAGACATTTATCTCTATGTAAACACCCCTGGTGGTTCTGTATCAGCTGGGCTCGCTATCGTGGAT
ACAATGAACTTTATCAAATCGGATGTCCAAACTATCGTTATGGGAATGGCTGCTTCTATGGGAACAATCATCGCCTCAAG
CGGTACTAAGGGTAAACGATTCATGTTACCAAATGCTGAATACCTCATTCACCAACCAATGGGTGGTGCAGGTCAAGGTA
CTCAACAAACTGATATGGCAATCGTCGCCGAACAACTTTTGAAAACACGTAAACGTTTGGAACAAATCCTTGCTGATAAT
TCTAATCGCTCACTTGAACAAATTCACAAAGATGCTGAACGTGACCATTGGATGGATGCCAAAGAAACTTTAGAATATGG
TTTCATTGATGAAATTATGGAAAATAATTCATTAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

99.497

100

0.995
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

98.995

100

0.99
  clpP Streptococcus mutans UA159

86.735

98.492

0.854
  clpP Streptococcus thermophilus LMD-9

86.224

98.492

0.849
  clpP Streptococcus thermophilus LMG 18311

86.224

98.492

0.849
  clpP Streptococcus pyogenes MGAS315

85.204

98.492

0.839
  clpP Streptococcus pyogenes JRS4

85.204

98.492

0.839
  clpP Streptococcus pneumoniae D39

84.103

97.99

0.824
  clpP Streptococcus pneumoniae TIGR4

84.103

97.99

0.824
  clpP Streptococcus pneumoniae R6

84.103

97.99

0.824
  clpP Streptococcus pneumoniae Rx1

84.103

97.99

0.824
  clpP Bacillus subtilis subsp. subtilis str. 168

57.895

95.477

0.553
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.477

96.985

0.548

Multiple sequence alignment