Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LPB19_RS06795 Genome accession   NZ_CP071247
Coordinates   1491230..1493290 (+) Length   686 a.a.
NCBI ID   WP_206645317.1    Uniprot ID   -
Organism   Marinobacter salinisoli strain LPB0319     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1486230..1498290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB19_RS06775 (LPB19_06775) pilM 1488375..1489439 (+) 1065 WP_206645313.1 pilus assembly protein PilM Machinery gene
  LPB19_RS06780 (LPB19_06780) - 1489439..1490002 (+) 564 WP_206645314.1 PilN domain-containing protein -
  LPB19_RS06785 (LPB19_06785) - 1490002..1490613 (+) 612 WP_206645315.1 type 4a pilus biogenesis protein PilO -
  LPB19_RS06790 (LPB19_06790) - 1490616..1491164 (+) 549 WP_206645316.1 pilus assembly protein PilP -
  LPB19_RS06795 (LPB19_06795) pilQ 1491230..1493290 (+) 2061 WP_206645317.1 type IV pilus secretin PilQ Machinery gene
  LPB19_RS06800 (LPB19_06800) aroK 1493431..1493997 (+) 567 WP_206645318.1 shikimate kinase AroK -
  LPB19_RS06805 (LPB19_06805) aroB 1493990..1495078 (+) 1089 WP_206645319.1 3-dehydroquinate synthase -
  LPB19_RS06810 (LPB19_06810) - 1495141..1496757 (+) 1617 WP_206645320.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 73659.78 Da        Isoelectric Point: 4.3088

>NTDB_id=544255 LPB19_RS06795 WP_206645317.1 1491230..1493290(+) (pilQ) [Marinobacter salinisoli strain LPB0319]
MFKKLNVYVGVITFGLLSSLANAVTLEDVAFSSLPGERLEVTLAFDGQPPEPTGYTIERPARIAIDLKDTTSGLDSRSIA
LGSGNAQSMTVVETKDRTRLIFNLVELVPYDTVRSGNSLVMTIGGESGSPSVAATSASATVSSAPRRADTLAGVDFRRGK
DGEGRVIVDLGSESTSVDLAEQAGKIRLTMSGVSVPENLRRRLDVTDFATPVHRIDTYMEGGSAVVEIRPEGSYDYIAYQ
SGSEFTVSVEKLTEEEAEARREEKFPYTGDKLSLNFQDIEVRSVLQLIADFTGLNLVASDTVGGSITLRLQNVPWDQALD
LILKTKGLDKRQIGNVLLVAPADEIAAREKLELETSKQIAELAPVRLEIIQVNYAKAAEVVALIEADQELISDRGFVSSD
ARTNTISVRETAEKLEEIRRLVSTWDVPVRQVSIEARIVRAQTNVAEDLGIRWGGAAYNVSGDNVFSVGGSQGAVEEARQ
AAAGGSNTITFPGALAVDLGVTGEGTSSFAIGWGSDDFLVDLELSALESDGQAEVVSQPRVVTADRQTASIKSGEEIPYQ
EASSSGATSVSFKEAVLSLEVTPQITPDDKIIMDLVVNQDSRGEVTAGIPSINTNEVTTQVLVGNGETVVLGGIFQSEVA
TQTTKTPFLGDIPYLGRLFKRTERIDERSELLIFITPKIIKSDLIQ

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=544255 LPB19_RS06795 WP_206645317.1 1491230..1493290(+) (pilQ) [Marinobacter salinisoli strain LPB0319]
ATGTTTAAAAAACTCAATGTATACGTCGGCGTGATCACTTTCGGGTTGCTGTCAAGCCTGGCTAACGCGGTCACTCTGGA
AGACGTGGCATTCTCTTCGCTGCCAGGAGAGCGGCTAGAGGTAACGTTGGCCTTCGATGGCCAGCCACCGGAGCCAACCG
GATACACCATCGAGCGTCCTGCTCGTATTGCCATTGACCTGAAAGATACAACCAGCGGACTGGATAGTCGCAGTATCGCT
CTGGGCTCGGGTAACGCACAGAGTATGACGGTGGTCGAGACCAAGGATCGCACTCGACTGATTTTCAATCTGGTGGAGCT
GGTCCCCTACGACACCGTAAGAAGCGGCAACTCCCTGGTGATGACGATCGGTGGCGAGTCGGGTTCCCCGTCAGTGGCAG
CCACGTCTGCGTCCGCAACGGTGTCCAGTGCGCCTCGTCGGGCAGATACGCTGGCCGGAGTTGATTTCCGGCGCGGAAAA
GACGGCGAGGGCCGTGTGATTGTGGATCTTGGCAGCGAATCCACCTCGGTTGATCTGGCCGAGCAGGCGGGCAAGATTCG
CTTGACCATGTCGGGCGTGTCCGTGCCTGAGAACCTGCGTCGCCGCTTGGACGTGACTGATTTTGCCACCCCTGTTCACC
GCATTGATACCTACATGGAAGGCGGCAGCGCCGTGGTCGAGATTCGTCCGGAAGGCAGCTACGACTATATTGCTTACCAG
TCCGGCAGTGAATTTACGGTCAGTGTCGAGAAACTGACCGAAGAGGAGGCGGAAGCCCGCCGCGAGGAGAAGTTCCCGTA
CACCGGAGATAAGCTGTCGCTCAATTTCCAGGATATTGAGGTTCGCTCCGTTCTGCAGTTGATCGCCGATTTCACCGGCC
TGAACCTGGTGGCCAGCGACACCGTTGGTGGAAGCATTACTCTGCGCCTTCAAAACGTACCCTGGGATCAGGCTCTGGAT
CTTATCCTGAAAACCAAGGGGCTGGACAAGCGTCAGATTGGTAACGTTCTTCTGGTCGCACCGGCAGATGAGATCGCTGC
ACGGGAAAAGCTGGAGCTGGAAACCAGCAAGCAGATTGCTGAGCTTGCGCCGGTTCGACTGGAGATTATCCAGGTCAACT
ACGCCAAGGCCGCGGAAGTGGTTGCATTGATTGAGGCCGATCAGGAACTGATTTCCGACCGTGGCTTTGTATCCTCCGAT
GCCCGTACCAACACCATCAGTGTGCGGGAAACGGCGGAAAAACTGGAAGAAATTCGTCGCCTGGTGTCCACCTGGGACGT
TCCGGTGCGTCAGGTATCCATCGAAGCCCGTATTGTTCGCGCTCAAACCAATGTGGCTGAGGACCTGGGTATTCGCTGGG
GTGGTGCTGCCTACAACGTGAGCGGCGACAATGTCTTCTCTGTGGGTGGTTCTCAGGGTGCTGTTGAAGAGGCTCGCCAG
GCCGCCGCAGGTGGCAGCAACACCATCACCTTCCCCGGTGCCTTGGCAGTGGATCTGGGCGTAACCGGTGAGGGCACCTC
CTCATTCGCCATCGGCTGGGGCAGTGATGACTTCCTGGTGGATCTGGAGCTGTCGGCGCTGGAAAGCGATGGCCAGGCTG
AGGTGGTTTCCCAGCCGCGGGTTGTGACTGCTGACCGTCAAACCGCTTCTATCAAGTCTGGTGAAGAGATCCCTTACCAG
GAAGCGTCTTCCAGCGGTGCAACATCGGTATCGTTCAAGGAAGCCGTGCTGTCCCTGGAAGTGACGCCGCAGATCACACC
TGATGACAAGATCATCATGGACCTGGTGGTCAACCAGGACTCCCGTGGCGAAGTGACCGCAGGGATCCCGTCCATTAACA
CCAACGAGGTCACCACGCAGGTACTGGTGGGTAATGGCGAGACTGTGGTGCTTGGCGGGATCTTCCAGTCTGAGGTGGCC
ACCCAGACCACCAAGACACCGTTCCTCGGCGACATTCCTTACCTGGGGCGCCTGTTCAAGCGCACCGAGCGTATCGATGA
GCGCAGTGAGTTGCTGATCTTCATCACGCCGAAGATCATCAAGAGCGACCTGATTCAGTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(295-341)

AMIN domain (AMIN)

(38-121)

Bacterial type II and III secretion system protein (Secretin)

(526-681)

Bacterial type II/III secretion system short domain (Secretin_N)

(368-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

50.287

100

0.512
  comQ Acinetobacter baylyi ADP1

40.993

100

0.421
  pilQ Acinetobacter baumannii D1279779

39.917

100

0.418
  pilQ Acinetobacter baumannii strain A118

39.917

100

0.418
  pilQ Legionella pneumophila strain Lp02

41.333

98.397

0.407
  pilQ Legionella pneumophila strain ERS1305867

41.333

98.397

0.407