Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JZ786_RS01235 Genome accession   NZ_CP071182
Coordinates   296563..297048 (-) Length   161 a.a.
NCBI ID   WP_206657053.1    Uniprot ID   A0A9X7VZ60
Organism   Alicyclobacillus mengziensis strain S30H14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 291563..302048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZ786_RS01200 (JZ786_01200) - 292215..292457 (+) 243 WP_206657047.1 hypothetical protein -
  JZ786_RS01205 (JZ786_01205) - 292474..292944 (-) 471 WP_206657048.1 hypothetical protein -
  JZ786_RS01210 (JZ786_01210) dnaB 292951..294315 (-) 1365 WP_206658921.1 replicative DNA helicase -
  JZ786_RS01215 (JZ786_01215) rplI 294426..294869 (-) 444 WP_206657049.1 50S ribosomal protein L9 -
  JZ786_RS01220 (JZ786_01220) - 294904..295806 (-) 903 WP_206657050.1 DUF2232 domain-containing protein -
  JZ786_RS01225 (JZ786_01225) - 295811..296107 (-) 297 WP_249226853.1 MazG-like family protein -
  JZ786_RS01230 (JZ786_01230) rpsR 296275..296505 (-) 231 WP_206657052.1 30S ribosomal protein S18 -
  JZ786_RS01235 (JZ786_01235) ssbA 296563..297048 (-) 486 WP_206657053.1 single-stranded DNA-binding protein Machinery gene
  JZ786_RS01240 (JZ786_01240) rpsF 297068..297355 (-) 288 WP_206657054.1 30S ribosomal protein S6 -
  JZ786_RS01245 (JZ786_01245) ychF 297535..298635 (-) 1101 WP_206657055.1 redox-regulated ATPase YchF -
  JZ786_RS01250 (JZ786_01250) - 299182..301179 (-) 1998 WP_206657056.1 molybdopterin-dependent oxidoreductase -
  JZ786_RS01255 (JZ786_01255) - 301172..301396 (-) 225 WP_249226661.1 DUF951 domain-containing protein -
  JZ786_RS01260 (JZ786_01260) - 301402..301596 (-) 195 WP_206657058.1 hypothetical protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17824.64 Da        Isoelectric Point: 4.8336

>NTDB_id=543552 JZ786_RS01235 WP_206657053.1 296563..297048(-) (ssbA) [Alicyclobacillus mengziensis strain S30H14]
MLNRVILIGRLTQDPELRYTGSGTAVASFALAVDRMRTSQSGERETDFINIVVWQKQAELCAQYLHKGRLAAVDGRLQIR
SYENREGQKVRVAEVVAETVRFLDRGDNSSSGGSSGYSQGPGQSQNASRQAPEPKRTPRFDDDPFADDSQSIDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=543552 JZ786_RS01235 WP_206657053.1 296563..297048(-) (ssbA) [Alicyclobacillus mengziensis strain S30H14]
ATGCTGAACCGGGTGATTTTAATTGGCCGCTTGACTCAAGATCCCGAACTCCGATACACCGGGTCAGGAACAGCTGTGGC
ATCGTTTGCGCTTGCCGTAGACAGGATGCGCACGTCCCAGTCAGGTGAACGTGAGACCGATTTTATCAACATCGTCGTAT
GGCAAAAGCAAGCCGAACTCTGTGCGCAGTACCTGCACAAAGGAAGGCTCGCAGCTGTTGATGGCCGACTGCAGATTCGC
AGTTACGAGAATCGGGAAGGACAAAAAGTCAGAGTTGCAGAGGTTGTTGCTGAAACTGTTCGGTTTCTTGACCGAGGAGA
CAATAGCTCTTCTGGCGGTTCCTCGGGGTATAGTCAGGGGCCAGGGCAGAGCCAGAACGCATCCCGCCAAGCACCCGAAC
CTAAGCGTACGCCCCGGTTCGACGACGATCCGTTCGCGGACGACAGTCAGTCCATTGATATTTCTGATGATGACTTGCCG
TTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.237

100

0.596
  ssb Latilactobacillus sakei subsp. sakei 23K

49.133

100

0.528
  ssb Neisseria meningitidis MC58

37.356

100

0.404
  ssb Neisseria gonorrhoeae MS11

37.356

100

0.404
  ssb Glaesserella parasuis strain SC1401

30.851

100

0.36
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.769

64.596

0.36
  ssb Vibrio cholerae strain A1552

32.222

100

0.36