Detailed information NTG0054340

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: BN112_RS12900
• Genome accession: NC_019382
• Coordinates: 2688294..2689514 (-)
• Length: 406 a.a.
• NCBI ID: WP_033449519.1
• Uniprot ID: -
• Organism: Bordetella bronchiseptica 253
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2683294..2694514

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BN112_RS12880 (BB253_2496)	phnC	2683935..2684705 (+)	771	WP_003808589.1	phosphonate ABC transporter ATP-binding protein	-
BN112_RS12885 (BB253_2497)	phnE	2684723..2685592 (+)	870	WP_172452875.1	phosphonate ABC transporter, permease protein PhnE	-
BN112_RS12890 (BB253_2498)	phnE	2685589..2686410 (+)	822	WP_003808584.1	phosphonate ABC transporter, permease protein PhnE	-
BN112_RS12895 (BB253_2499)	-	2686649..2688247 (+)	1599	WP_015064458.1	CYTH and CHAD domain-containing protein	-
BN112_RS12900 (BB253_2500)	pilA	2688294..2689514 (-)	1221	WP_033449519.1	signal recognition particle-docking protein FtsY	Machinery gene
BN112_RS12905 (BB253_2501)	rsmD	2689590..2690210 (+)	621	WP_015064460.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
BN112_RS12910 (BB253_2502)	coaD	2690231..2690740 (+)	510	WP_003808574.1	pantetheine-phosphate adenylyltransferase	-
BN112_RS12915 (BB253_2503)	-	2690795..2691046 (+)	252	WP_003808570.1	YfhL family 4Fe-4S dicluster ferredoxin	-
BN112_RS12920 (BB253_2504)	-	2691043..2692260 (+)	1218	WP_003808568.1	benzoate/H(+) symporter BenE family transporter	-
BN112_RS12925 (BB253_2505)	-	2692268..2692654 (-)	387	WP_003808567.1	MOSC N-terminal beta barrel domain-containing protein	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 42384.45 Da
• Isoelectric Point: 5.3014

>NTDB_id=54340 BN112_RS12900 WP_033449519.1 2688294..2689514(-) (pilA) [Bordetella bronchiseptica 253]
MFSFFKKKSPPPAAPAQPAPPPEAVDAGSAAPAQPQPAEPQPAPMPAPQPEPQPEPQPQQPPEPAPPAMASPPVAEPQPP
VAESQPPVAEPQPPVAAAPEAPRKASWLSRLKQGLSRTGQNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAAL
RARVKKERIDDPAQVKTALRQLLADHLRPLERSFDLGRAQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTF
RAAAREQLVEWGSRNNVTVISQDGGDPAAVAFDSVNAGRARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPH
EVLLVVDGNTGQNALAQIRAFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEFA
AALLAD

Nucleotide

• Length: 1221 bp

>NTDB_id=54340 BN112_RS12900 WP_033449519.1 2688294..2689514(-) (pilA) [Bordetella bronchiseptica 253]
ATGTTCAGCTTCTTCAAGAAAAAATCCCCTCCGCCCGCCGCGCCGGCCCAGCCCGCGCCGCCGCCGGAGGCAGTGGACGC
AGGGTCAGCCGCACCTGCGCAGCCTCAACCCGCCGAGCCGCAACCGGCCCCGATGCCGGCCCCCCAGCCCGAGCCGCAGC
CCGAGCCGCAGCCGCAACAACCGCCCGAGCCGGCGCCGCCGGCCATGGCGTCGCCGCCTGTCGCCGAGCCGCAGCCACCT
GTCGCCGAGTCGCAGCCACCTGTCGCCGAGCCGCAGCCACCGGTCGCGGCCGCGCCCGAGGCGCCCCGCAAGGCCTCGTG
GCTGAGCCGGCTCAAACAGGGCCTGTCGCGCACCGGCCAGAACATCGGCGGGCTGTTCGTCGGCGTGAAGGTCGACGAGA
ACCTGTTCGAGGAACTGGAGTCGGCGCTGATCATGGCCGACGCGGGCATCGAGGCCACCGAGAAACTGCTGGCCGCGCTG
CGCGCGCGCGTCAAGAAAGAGCGCATCGACGATCCGGCGCAGGTCAAGACGGCGCTGCGCCAATTGCTGGCCGACCATCT
GCGGCCGCTGGAGCGGTCCTTCGACCTGGGGCGGGCCCAGCCCCTGGTGGTCATGATTGCCGGCGTCAACGGCGCGGGCA
AGACGACCTCGATCGGCAAGCTGGCGCATACCTTCCAGCGCCAGGGCGCCAGCGTGCTGCTGGCGGCCGGGGACACCTTC
CGCGCGGCGGCGCGCGAGCAATTGGTCGAATGGGGCAGCCGCAACAATGTGACCGTGATCTCGCAGGATGGCGGCGATCC
GGCCGCGGTGGCGTTCGACTCGGTCAATGCCGGACGTGCGCGCAACGTGGGCGTGGTGATGGTGGATACGGCCGGCCGCC
TGCCCACGCAGCTGCACCTGATGGAAGAATTGAAGAAGATCCGCCGCGTCATCGGCAAGGCCGAGGCCAGCGCGCCGCAT
GAAGTGCTGCTGGTGGTCGATGGCAACACCGGCCAGAACGCGCTGGCGCAAATCCGCGCCTTCGACGCCGCCATCACCCT
CACCGGCCTGGTCGTCACCAAGCTGGACGGCACCGCCAAGGGCGGCACGCTGGCGGCCGTGGCCGCCGGCAGCCAGGGCG
TGCGGCCCATCCCGGTCTATTGGATCGGCGTGGGCGAGGGGTTGGAGGACCTGCAGCCCTTCGTGGCCGACGAGTTCGCC
GCCGCCCTGCTGGCCGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (202-404)

• SRP54-type protein, helical bundle domain (SRP54_N) (122-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.357	100	0.507