Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   SCAZ3_RS05570 Genome accession   NZ_AIDX01000001
Coordinates   1156727..1157155 (+) Length   142 a.a.
NCBI ID   WP_039994748.1    Uniprot ID   -
Organism   Streptococcus canis FSL Z3-227     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1151727..1162155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCAZ3_RS05550 (SCAZ3_00925) - 1154063..1154428 (+) 366 WP_003046179.1 DUF1033 family protein -
  SCAZ3_RS05555 (SCAZ3_00930) comGA 1154515..1155456 (+) 942 WP_003046182.1 competence type IV pilus ATPase ComGA Machinery gene
  SCAZ3_RS05560 (SCAZ3_00935) comGB 1155389..1156423 (+) 1035 WP_223824829.1 competence type IV pilus assembly protein ComGB Machinery gene
  SCAZ3_RS05565 (SCAZ3_00940) comGC/cglC 1156426..1156752 (+) 327 WP_003046186.1 competence type IV pilus major pilin ComGC Machinery gene
  SCAZ3_RS05570 (SCAZ3_00945) comGD 1156727..1157155 (+) 429 WP_039994748.1 competence type IV pilus minor pilin ComGD Machinery gene
  SCAZ3_RS05575 (SCAZ3_00950) comGE 1157133..1157408 (+) 276 WP_003046190.1 competence type IV pilus minor pilin ComGE Machinery gene
  SCAZ3_RS05580 (SCAZ3_00955) comGF 1157389..1157829 (+) 441 WP_003046192.1 competence type IV pilus minor pilin ComGF Machinery gene
  SCAZ3_RS05585 (SCAZ3_00960) comGG 1157807..1158187 (+) 381 WP_003046193.1 competence type IV pilus minor pilin ComGG -
  SCAZ3_RS05590 (SCAZ3_00965) comGH 1158237..1159190 (+) 954 WP_003046195.1 class I SAM-dependent methyltransferase Machinery gene
  SCAZ3_RS05595 (SCAZ3_00970) - 1159249..1160445 (+) 1197 WP_003046198.1 acetate kinase -
  SCAZ3_RS05600 (SCAZ3_00975) - 1160768..1160974 (+) 207 WP_003046200.1 helix-turn-helix transcriptional regulator -
  SCAZ3_RS05605 (SCAZ3_00980) - 1161132..1161503 (+) 372 WP_003046201.1 hypothetical protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16488.11 Da        Isoelectric Point: 10.3654

>NTDB_id=54340 SCAZ3_RS05570 WP_039994748.1 1156727..1157155(+) (comGD) [Streptococcus canis FSL Z3-227]
MKKPVLMIKAFTLLETLLSLSVMSFIVLGLSFPVTSSYRRVQEHLFFTRFEHLYRHQQKVAILQQEKRVLTISSKEIRTE
DEGLKVPDSIRVKSSRQLVLDHMGGNHSLTKLTFETGEQRLSYQFYLGSGNYQKTSERLHSP

Nucleotide


Download         Length: 429 bp        

>NTDB_id=54340 SCAZ3_RS05570 WP_039994748.1 1156727..1157155(+) (comGD) [Streptococcus canis FSL Z3-227]
ATGAAAAAGCCAGTCTTAATGATTAAAGCTTTTACGCTACTTGAAACTTTACTGAGTCTGTCAGTGATGAGCTTTATCGT
ACTGGGCTTATCTTTTCCAGTGACAAGTAGTTATCGGAGAGTTCAAGAGCATTTATTTTTCACCCGTTTTGAGCACCTTT
ACCGGCATCAGCAAAAGGTGGCCATTTTACAGCAAGAAAAACGGGTTCTAACGATTTCTTCTAAAGAAATTAGGACAGAA
GATGAGGGCTTAAAAGTACCTGATTCGATAAGGGTTAAAAGTAGTCGCCAGCTAGTCCTTGATCACATGGGAGGCAATCA
TTCGTTGACCAAGTTAACTTTTGAGACAGGGGAACAACGTCTCAGCTACCAATTTTATCTGGGGAGTGGAAATTATCAAA
AAACAAGTGAAAGGTTACATAGCCCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus gordonii str. Challis substr. CH1

43.939

92.958

0.408
  comGD Streptococcus mutans UA140

44.186

90.845

0.401
  comGD Streptococcus mutans UA159

44.186

90.845

0.401
  comGD/cglD Streptococcus mitis NCTC 12261

42.222

95.07

0.401
  comGD/cglD Streptococcus mitis SK321

41.985

92.254

0.387
  comGD/cglD Streptococcus pneumoniae Rx1

41.221

92.254

0.38
  comGD/cglD Streptococcus pneumoniae D39

41.221

92.254

0.38
  comGD/cglD Streptococcus pneumoniae R6

41.221

92.254

0.38
  comGD/cglD Streptococcus pneumoniae TIGR4

40.458

92.254

0.373

Multiple sequence alignment