Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   JZI48_RS02450 Genome accession   NZ_CP071145
Coordinates   533262..533441 (-) Length   59 a.a.
NCBI ID   WP_002983481.1    Uniprot ID   -
Organism   Streptococcus equi subsp. equi strain 470_007     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 528262..538441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZI48_RS02430 (JZI48_02430) - 529528..529830 (-) 303 WP_012678425.1 YlxQ-related RNA-binding protein -
  JZI48_RS02435 (JZI48_02435) - 529823..530119 (-) 297 WP_012679099.1 YlxR family protein -
  JZI48_RS02440 (JZI48_02440) nusA 530135..531289 (-) 1155 WP_012515088.1 transcription termination factor NusA -
  JZI48_RS02445 (JZI48_02445) rimP 531399..531881 (-) 483 WP_042356782.1 ribosome maturation factor RimP -
  JZI48_RS02450 (JZI48_02450) prx 533262..533441 (-) 180 WP_002983481.1 hypothetical protein Regulator
  JZI48_RS02455 (JZI48_02455) - 533508..534302 (-) 795 WP_050315918.1 DNA/RNA non-specific endonuclease -
  JZI48_RS02460 (JZI48_02460) - 534529..535725 (-) 1197 WP_012679341.1 glucosaminidase domain-containing protein -
  JZI48_RS02465 (JZI48_02465) - 535837..536016 (-) 180 WP_012679339.1 holin -
  JZI48_RS02470 (JZI48_02470) - 536019..536309 (-) 291 WP_012679338.1 hypothetical protein -
  JZI48_RS02475 (JZI48_02475) - 536322..536939 (-) 618 WP_050316075.1 DUF1366 domain-containing protein -
  JZI48_RS02480 (JZI48_02480) - 536942..537373 (-) 432 WP_050316074.1 DUF1617 family protein -

Sequence

Protein


Download         Length: 59 a.a.        Molecular weight: 6917.86 Da        Isoelectric Point: 4.1813

>NTDB_id=543155 JZI48_RS02450 WP_002983481.1 533262..533441(-) (prx) [Streptococcus equi subsp. equi strain 470_007]
MLTYDEFKQAIDRGYIVEDTVTIVRKNGQIFDYVLPHEKVKNGEVVTDEKVEEVLMELE

Nucleotide


Download         Length: 180 bp        

>NTDB_id=543155 JZI48_RS02450 WP_002983481.1 533262..533441(-) (prx) [Streptococcus equi subsp. equi strain 470_007]
ATGCTAACATACGACGAATTTAAGCAAGCTATTGACCGTGGATATATCGTAGAAGACACAGTCACGATCGTGCGTAAAAA
CGGACAGATTTTTGATTATGTGTTGCCACATGAGAAAGTAAAGAATGGAGAAGTTGTGACAGACGAAAAAGTAGAAGAAG
TGCTGATGGAATTGGAGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

87.931

98.305

0.864
  prx Streptococcus pyogenes MGAS8232

87.931

98.305

0.864
  prx Streptococcus pyogenes MGAS315

79.661

100

0.797
  prx Streptococcus pyogenes MGAS315

71.186

100

0.712
  prx Streptococcus pyogenes MGAS315

86.047

72.881

0.627
  prx Streptococcus pyogenes MGAS315

87.805

69.492

0.61
  prx Streptococcus pyogenes MGAS315

76.19

71.186

0.542