Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   JZI48_RS00885 Genome accession   NZ_CP071145
Coordinates   197573..197755 (-) Length   60 a.a.
NCBI ID   WP_012679346.1    Uniprot ID   C0MBQ2
Organism   Streptococcus equi subsp. equi strain 470_007     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 192573..202755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZI48_RS00865 (JZI48_00865) - 193024..194118 (-) 1095 WP_012679349.1 LPXTG cell wall anchor domain-containing protein -
  JZI48_RS00870 (JZI48_00870) asnS 194419..195765 (-) 1347 WP_012679348.1 asparagine--tRNA ligase -
  JZI48_RS00875 (JZI48_00875) - 195778..196989 (-) 1212 WP_012679347.1 pyridoxal phosphate-dependent aminotransferase -
  JZI48_RS00880 (JZI48_00880) - 196986..197381 (-) 396 WP_228275436.1 DUF5590 domain-containing protein -
  JZI48_RS00885 (JZI48_00885) prx 197573..197755 (-) 183 WP_012679346.1 hypothetical protein Regulator
  JZI48_RS10905 - 197823..198110 (-) 288 WP_011106694.1 hypothetical protein -
  JZI48_RS00890 (JZI48_00890) - 198104..198679 (-) 576 WP_012679345.1 phospholipase A2 SlaA -
  JZI48_RS00895 (JZI48_00895) - 199051..199887 (-) 837 WP_012679343.1 hypothetical protein -
  JZI48_RS00900 (JZI48_00900) - 199891..200433 (-) 543 WP_012679342.1 type II toxin-antitoxin system antitoxin SocA domain-containing protein -
  JZI48_RS00905 (JZI48_00905) - 200568..201764 (-) 1197 WP_012679341.1 glucosaminidase domain-containing protein -
  JZI48_RS00910 (JZI48_00910) - 201876..202055 (-) 180 WP_012679339.1 holin -
  JZI48_RS00915 (JZI48_00915) - 202058..202348 (-) 291 WP_012679338.1 hypothetical protein -

Sequence

Protein


Download         Length: 60 a.a.        Molecular weight: 6943.77 Da        Isoelectric Point: 4.1677

>NTDB_id=543148 JZI48_RS00885 WP_012679346.1 197573..197755(-) (prx) [Streptococcus equi subsp. equi strain 470_007]
MLTYDEFKQAVDNGYITGDTVTIVRKNGQILDYVLPHEEVRNGEVVTDEKVEEVMRELDK

Nucleotide


Download         Length: 183 bp        

>NTDB_id=543148 JZI48_RS00885 WP_012679346.1 197573..197755(-) (prx) [Streptococcus equi subsp. equi strain 470_007]
ATGCTAACATACGACGAATTTAAGCAGGCAGTTGATAACGGTTATATCACAGGCGACACAGTCACGATCGTGCGTAAAAA
CGGACAGATTTTGGATTATGTGTTGCCGCATGAGGAAGTAAGGAACGGGGAGGTTGTGACAGACGAAAAAGTGGAAGAGG
TGATGAGAGAATTAGACAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

85

100

0.85
  prx Streptococcus pyogenes MGAS8232

80

100

0.8
  prx Streptococcus pyogenes MGAS315

78.333

100

0.783
  prx Streptococcus pyogenes MGAS315

76.667

100

0.767
  prx Streptococcus pyogenes MGAS315

76.667

100

0.767
  prx Streptococcus pyogenes MGAS315

86.047

71.667

0.617
  prx Streptococcus pyogenes MGAS315

73.81

70

0.517