Detailed information    

insolico Bioinformatically predicted

Overview


Name   prx   Type   Regulator
Locus tag   JZI59_RS10005 Genome accession   NZ_CP071144
Coordinates   2067277..2067459 (+) Length   60 a.a.
NCBI ID   WP_012679346.1    Uniprot ID   C0MBQ2
Organism   Streptococcus equi subsp. equi strain 470_008     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2010354..2072009 2067277..2067459 within 0


Gene organization within MGE regions


Location: 2010354..2072009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZI59_RS09655 (JZI59_09655) - 2010354..2010638 (+) 285 WP_173476790.1 hypothetical protein -
  JZI59_RS11110 - 2010663..2011547 (+) 885 WP_250880204.1 MFS transporter -
  JZI59_RS09665 (JZI59_09665) - 2011746..2012261 (-) 516 WP_012679278.1 hypothetical protein -
  JZI59_RS09670 (JZI59_09670) - 2012478..2013326 (+) 849 WP_012515348.1 glycoside hydrolase family 25 protein -
  JZI59_RS09675 (JZI59_09675) thiT 2013878..2014441 (+) 564 WP_012679277.1 energy-coupled thiamine transporter ThiT -
  JZI59_RS09680 (JZI59_09680) - 2014602..2015081 (+) 480 WP_012679276.1 aminoacyl-tRNA deacylase -
  JZI59_RS09685 (JZI59_09685) - 2015078..2015212 (+) 135 Protein_1866 YccF domain-containing protein -
  JZI59_RS09695 (JZI59_09695) - 2016653..2017243 (+) 591 WP_042356873.1 ABC transporter ATP-binding protein -
  JZI59_RS09700 (JZI59_09700) - 2017253..2018815 (+) 1563 WP_042356875.1 ABC transporter ATP-binding protein -
  JZI59_RS09705 (JZI59_09705) prfB 2019198..2020299 (+) 1102 WP_111692358.1 peptide chain release factor 2 -
  JZI59_RS09710 (JZI59_09710) ftsE 2020350..2021042 (+) 693 WP_012678167.1 cell division ATP-binding protein FtsE -
  JZI59_RS09715 (JZI59_09715) ftsX 2021035..2021964 (+) 930 WP_042357406.1 permease-like cell division protein FtsX -
  JZI59_RS09720 (JZI59_09720) - 2022354..2022995 (-) 642 WP_012679287.1 MBL fold metallo-hydrolase -
  JZI59_RS09725 (JZI59_09725) - 2023332..2025803 (+) 2472 WP_012679288.1 bifunctional DnaQ family exonuclease/ATP-dependent helicase -
  JZI59_RS09730 (JZI59_09730) - 2025977..2027143 (-) 1167 WP_012679289.1 site-specific integrase -
  JZI59_RS11115 - 2027321..2027578 (-) 258 WP_012679290.1 phage membrane protein -
  JZI59_RS09740 (JZI59_09740) - 2027903..2028307 (-) 405 WP_012679291.1 ImmA/IrrE family metallo-endopeptidase -
  JZI59_RS09745 (JZI59_09745) - 2028321..2028671 (-) 351 WP_012679292.1 helix-turn-helix transcriptional regulator -
  JZI59_RS09755 (JZI59_09755) - 2030529..2030741 (+) 213 WP_012679293.1 hypothetical protein -
  JZI59_RS09760 (JZI59_09760) - 2030814..2031065 (+) 252 WP_012679294.1 hypothetical protein -
  JZI59_RS09765 (JZI59_09765) - 2031341..2031682 (+) 342 WP_012679297.1 hypothetical protein -
  JZI59_RS09770 (JZI59_09770) - 2031682..2032164 (+) 483 WP_012679298.1 siphovirus Gp157 family protein -
  JZI59_RS09775 (JZI59_09775) - 2032161..2032634 (+) 474 WP_012679299.1 hypothetical protein -
  JZI59_RS09780 (JZI59_09780) - 2032594..2033769 (+) 1176 WP_050315853.1 DEAD/DEAH box helicase family protein -
  JZI59_RS09785 (JZI59_09785) - 2033779..2034489 (+) 711 WP_012679301.1 ERF family protein -
  JZI59_RS09790 (JZI59_09790) ssbA 2034490..2034882 (+) 393 WP_012679302.1 single-stranded DNA-binding protein Machinery gene
  JZI59_RS09795 (JZI59_09795) - 2034896..2035723 (+) 828 WP_012679303.1 bifunctional DNA primase/polymerase -
  JZI59_RS09800 (JZI59_09800) - 2035707..2037107 (+) 1401 WP_012679304.1 virulence-associated E family protein -
  JZI59_RS09805 (JZI59_09805) - 2037463..2037657 (+) 195 WP_012679305.1 hypothetical protein -
  JZI59_RS09810 (JZI59_09810) - 2037650..2037877 (+) 228 WP_012679306.1 hypothetical protein -
  JZI59_RS09815 (JZI59_09815) - 2037888..2038577 (+) 690 WP_042356880.1 site-specific DNA-methyltransferase -
  JZI59_RS09820 (JZI59_09820) - 2038579..2039370 (+) 792 WP_050315852.1 DNA cytosine methyltransferase -
  JZI59_RS09825 (JZI59_09825) - 2039354..2039857 (+) 504 WP_050315851.1 DNA cytosine methyltransferase -
  JZI59_RS09830 (JZI59_09830) - 2039847..2040365 (+) 519 WP_012679308.1 DUF1642 domain-containing protein -
  JZI59_RS09835 (JZI59_09835) - 2040392..2040691 (+) 300 WP_042357412.1 hypothetical protein -
  JZI59_RS09840 (JZI59_09840) - 2040708..2040881 (+) 174 WP_012679310.1 hypothetical protein -
  JZI59_RS09845 (JZI59_09845) - 2041218..2041658 (+) 441 WP_012679312.1 ArpU family phage packaging/lysis transcriptional regulator -
  JZI59_RS09850 (JZI59_09850) - 2042056..2042433 (-) 378 WP_012679314.1 type II toxin-antitoxin system HicB family antitoxin -
  JZI59_RS09855 (JZI59_09855) - 2042485..2042670 (-) 186 WP_012679315.1 type II toxin-antitoxin system HicA family toxin -
  JZI59_RS09860 (JZI59_09860) - 2042786..2043121 (+) 336 WP_012679316.1 HNH endonuclease signature motif containing protein -
  JZI59_RS09865 (JZI59_09865) - 2043284..2043751 (+) 468 WP_002985371.1 phage terminase small subunit P27 family -
  JZI59_RS09870 (JZI59_09870) - 2043766..2045520 (+) 1755 WP_012679317.1 terminase TerL endonuclease subunit -
  JZI59_RS09875 (JZI59_09875) - 2045517..2045687 (+) 171 WP_012679318.1 hypothetical protein -
  JZI59_RS09880 (JZI59_09880) - 2045680..2045946 (+) 267 WP_012679319.1 hypothetical protein -
  JZI59_RS09885 (JZI59_09885) - 2045980..2047200 (+) 1221 WP_012679320.1 phage portal protein -
  JZI59_RS09890 (JZI59_09890) - 2047178..2047843 (+) 666 WP_012679321.1 head maturation protease, ClpP-related -
  JZI59_RS09895 (JZI59_09895) - 2047868..2049055 (+) 1188 WP_012679322.1 phage major capsid protein -
  JZI59_RS11200 - 2049069..2049197 (+) 129 WP_012679323.1 hypothetical protein -
  JZI59_RS09900 (JZI59_09900) - 2049200..2049502 (+) 303 WP_012679324.1 head-tail connector protein -
  JZI59_RS09905 (JZI59_09905) - 2049499..2049846 (+) 348 WP_012679325.1 phage head closure protein -
  JZI59_RS09910 (JZI59_09910) - 2049843..2050220 (+) 378 WP_012679326.1 HK97-gp10 family putative phage morphogenesis protein -
  JZI59_RS09915 (JZI59_09915) - 2050217..2050642 (+) 426 WP_050315850.1 hypothetical protein -
  JZI59_RS09920 (JZI59_09920) - 2050658..2051248 (+) 591 WP_012679328.1 major tail protein -
  JZI59_RS09925 (JZI59_09925) - 2051300..2051626 (+) 327 WP_012679329.1 hypothetical protein -
  JZI59_RS09930 (JZI59_09930) - 2051674..2051823 (+) 150 WP_021299462.1 hypothetical protein -
  JZI59_RS09935 (JZI59_09935) - 2051836..2055495 (+) 3660 WP_050315849.1 phage tail tape measure protein -
  JZI59_RS09940 (JZI59_09940) - 2055495..2056202 (+) 708 WP_012679331.1 distal tail protein Dit -
  JZI59_RS09945 (JZI59_09945) - 2056199..2058340 (+) 2142 WP_012679332.1 phage tail spike protein -
  JZI59_RS09950 (JZI59_09950) - 2058340..2059101 (+) 762 WP_012679333.1 collagen-like protein -
  JZI59_RS09955 (JZI59_09955) - 2059103..2059720 (+) 618 WP_012679334.1 hypothetical protein -
  JZI59_RS09960 (JZI59_09960) - 2059731..2061614 (+) 1884 WP_012679335.1 gp58-like family protein -
  JZI59_RS09965 (JZI59_09965) - 2061623..2062054 (+) 432 WP_012679336.1 DUF1617 family protein -
  JZI59_RS09970 (JZI59_09970) - 2062057..2062671 (+) 615 WP_012679337.1 DUF1366 domain-containing protein -
  JZI59_RS09975 (JZI59_09975) - 2062684..2062974 (+) 291 WP_012679338.1 hypothetical protein -
  JZI59_RS09980 (JZI59_09980) - 2062977..2063156 (+) 180 WP_012679339.1 holin -
  JZI59_RS09985 (JZI59_09985) - 2063268..2064464 (+) 1197 WP_012679341.1 glucosaminidase domain-containing protein -
  JZI59_RS09990 (JZI59_09990) - 2064599..2065141 (+) 543 WP_012679342.1 type II toxin-antitoxin system antitoxin SocA domain-containing protein -
  JZI59_RS09995 (JZI59_09995) - 2065145..2065981 (+) 837 WP_012679343.1 hypothetical protein -
  JZI59_RS10000 (JZI59_10000) - 2066353..2066928 (+) 576 WP_012679345.1 phospholipase A2 SlaA -
  JZI59_RS11120 - 2066922..2067209 (+) 288 WP_011106694.1 hypothetical protein -
  JZI59_RS10005 (JZI59_10005) prx 2067277..2067459 (+) 183 WP_012679346.1 hypothetical protein Regulator
  JZI59_RS10010 (JZI59_10010) - 2067651..2068046 (+) 396 WP_228275436.1 DUF5590 domain-containing protein -
  JZI59_RS10015 (JZI59_10015) - 2068043..2069254 (+) 1212 WP_012679347.1 pyridoxal phosphate-dependent aminotransferase -
  JZI59_RS10020 (JZI59_10020) asnS 2069267..2070613 (+) 1347 WP_012679348.1 asparagine--tRNA ligase -
  JZI59_RS10025 (JZI59_10025) - 2070915..2072009 (+) 1095 WP_012679349.1 LPXTG cell wall anchor domain-containing protein -

Sequence


Protein


Download         Length: 60 a.a.        Molecular weight: 6943.77 Da        Isoelectric Point: 4.1677

>NTDB_id=543140 JZI59_RS10005 WP_012679346.1 2067277..2067459(+) (prx) [Streptococcus equi subsp. equi strain 470_008]
MLTYDEFKQAVDNGYITGDTVTIVRKNGQILDYVLPHEEVRNGEVVTDEKVEEVMRELDK

Nucleotide


Download         Length: 183 bp        

>NTDB_id=543140 JZI59_RS10005 WP_012679346.1 2067277..2067459(+) (prx) [Streptococcus equi subsp. equi strain 470_008]
ATGCTAACATACGACGAATTTAAGCAGGCAGTTGATAACGGTTATATCACAGGCGACACAGTCACGATCGTGCGTAAAAA
CGGACAGATTTTGGATTATGTGTTGCCGCATGAGGAAGTAAGGAACGGGGAGGTTGTGACAGACGAAAAAGTGGAAGAGG
TGATGAGAGAATTAGACAAATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB C0MBQ2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

85

100

0.85

  prx Streptococcus pyogenes MGAS8232

80

100

0.8

  prx Streptococcus pyogenes MGAS315

78.333

100

0.783

  prx Streptococcus pyogenes MGAS315

76.667

100

0.767

  prx Streptococcus pyogenes MGAS315

76.667

100

0.767

  prx Streptococcus pyogenes MGAS315

86.047

71.667

0.617

  prx Streptococcus pyogenes MGAS315

73.81

70

0.517