NTDB

Overview

Name	comEA	Type	Machinery gene
Locus tag	JW886_RS08360	Genome accession	NZ_CP070872
Coordinates	1688433..1689086 (-)	Length	217 a.a.
NCBI ID	WP_205871841.1	Uniprot ID	-
Organism	Lactococcus taiwanensis strain K_LL004
Function	dsDNA binding to the cell surface (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1683433..1694086

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JW886_RS08335 (JW886_08335)	atpF	1683550..1684056 (-)	507	WP_200407401.1	F0F1 ATP synthase subunit B	-
JW886_RS08340 (JW886_08340)	atpB	1684071..1684784 (-)	714	WP_075526233.1	F0F1 ATP synthase subunit A	-
JW886_RS08345 (JW886_08345)	-	1684829..1685044 (-)	216	WP_004255250.1	F0F1 ATP synthase subunit C	-
JW886_RS08350 (JW886_08350)	-	1685243..1686019 (-)	777	WP_205871839.1	alpha/beta hydrolase	-
JW886_RS08355 (JW886_08355)	comEC	1686242..1688308 (-)	2067	WP_338092707.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
JW886_RS08360 (JW886_08360)	comEA	1688433..1689086 (-)	654	WP_205871841.1	ComEA family DNA-binding protein	Machinery gene
JW886_RS08365 (JW886_08365)	-	1689158..1690504 (-)	1347	WP_205871842.1	ABC transporter permease	-
JW886_RS08370 (JW886_08370)	-	1690507..1691427 (-)	921	WP_205871843.1	ABC transporter ATP-binding protein	-
JW886_RS08375 (JW886_08375)	-	1691518..1691928 (-)	411	WP_205871844.1	hypothetical protein	-
JW886_RS08380 (JW886_08380)	-	1692080..1692256 (-)	177	WP_155724404.1	hypothetical protein	-
JW886_RS08385 (JW886_08385)	-	1692318..1693496 (-)	1179	WP_082272355.1	SLC13 family permease	-

Sequence

Protein

Download Length: 217 a.a. Molecular weight: 23408.34 Da Isoelectric Point: 4.4787

                                >NTDB_id=541223 JW886_RS08360 WP_205871841.1 1688433..1689086(-) (comEA) [Lactococcus taiwanensis strain K_LL004]

MEKIVEIIKENWKMMVLILVGVIAGGSGYVLTQPRTSDQPVAVTQLENQPTSSDTDQSVSKSENPISTSQIVVDLKGAVK

YPKVYRIAADERVDDLIQLAGGFTADADQRRVNLAAKLKDEEVVYVSKKGENSPEGVTNTSDATDQPLTTSSAAKVNINT

ADLASLETLSGIGEKKAQDIIDYRTKNGNFQKLEDLGNVSGFGVKTLETLKDSICID

Nucleotide

Download Length: 654 bp

                                >NTDB_id=541223 JW886_RS08360 WP_205871841.1 1688433..1689086(-) (comEA) [Lactococcus taiwanensis strain K_LL004]

ATGGAAAAAATAGTTGAAATAATCAAAGAAAATTGGAAAATGATGGTATTAATCTTGGTGGGAGTAATAGCAGGTGGGAG

TGGCTATGTCCTTACTCAGCCTAGAACGTCGGATCAGCCAGTAGCTGTCACCCAGCTTGAAAATCAGCCTACTTCAAGTG

ATACTGACCAGTCTGTCAGTAAAAGTGAAAATCCGATAAGCACTAGCCAGATCGTTGTGGATTTAAAAGGTGCGGTCAAA

TACCCCAAAGTTTATAGGATAGCAGCTGACGAGCGTGTTGATGACTTGATACAGTTGGCAGGTGGATTTACCGCAGATGC

AGATCAACGGAGAGTTAATCTTGCAGCTAAACTCAAAGATGAGGAAGTGGTGTATGTCAGTAAAAAAGGTGAGAATAGTC

CAGAAGGAGTGACAAATACTTCAGATGCAACGGATCAACCGCTTACCACATCATCAGCAGCAAAAGTCAACATTAATACT

GCCGACCTAGCAAGTCTGGAGACCTTAAGCGGGATTGGTGAGAAGAAAGCTCAAGATATTATTGATTACCGTACTAAAAA

TGGTAATTTTCAGAAATTAGAAGATCTCGGCAATGTATCAGGATTTGGTGTGAAGACTTTAGAAACATTGAAAGATAGTA

TTTGTATTGATTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(72-126)

Helix-hairpin-helix motif (HHH_3)

(152-214)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comEA	Lactococcus lactis subsp. cremoris KW2	51.131	100	0.521
comEA/celA/cilE	Streptococcus pneumoniae TIGR4	39.462	100	0.406
comEA/celA/cilE	Streptococcus mitis SK321	39.013	100	0.401
comEA/celA/cilE	Streptococcus pneumoniae D39	38.565	100	0.396
comEA/celA/cilE	Streptococcus pneumoniae R6	38.565	100	0.396
comEA/celA/cilE	Streptococcus mitis NCTC 12261	38.565	100	0.396
comEA/celA/cilE	Streptococcus pneumoniae Rx1	38.565	100	0.396
comEA	Latilactobacillus sakei subsp. sakei 23K	35.931	100	0.382

Detailed information NTG0541223