Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   JW886_RS08355 Genome accession   NZ_CP070872
Coordinates   1686242..1688308 (-) Length   688 a.a.
NCBI ID   WP_338092707.1    Uniprot ID   -
Organism   Lactococcus taiwanensis strain K_LL004     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1681242..1693308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW886_RS08325 (JW886_08325) atpA 1681492..1682994 (-) 1503 WP_075526230.1 F0F1 ATP synthase subunit alpha -
  JW886_RS08330 (JW886_08330) - 1683009..1683536 (-) 528 WP_075526231.1 F0F1 ATP synthase subunit delta -
  JW886_RS08335 (JW886_08335) atpF 1683550..1684056 (-) 507 WP_200407401.1 F0F1 ATP synthase subunit B -
  JW886_RS08340 (JW886_08340) atpB 1684071..1684784 (-) 714 WP_075526233.1 F0F1 ATP synthase subunit A -
  JW886_RS08345 (JW886_08345) - 1684829..1685044 (-) 216 WP_004255250.1 F0F1 ATP synthase subunit C -
  JW886_RS08350 (JW886_08350) - 1685243..1686019 (-) 777 WP_205871839.1 alpha/beta hydrolase -
  JW886_RS08355 (JW886_08355) comEC 1686242..1688308 (-) 2067 WP_338092707.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JW886_RS08360 (JW886_08360) comEA 1688433..1689086 (-) 654 WP_205871841.1 ComEA family DNA-binding protein Machinery gene
  JW886_RS08365 (JW886_08365) - 1689158..1690504 (-) 1347 WP_205871842.1 ABC transporter permease -
  JW886_RS08370 (JW886_08370) - 1690507..1691427 (-) 921 WP_205871843.1 ABC transporter ATP-binding protein -
  JW886_RS08375 (JW886_08375) - 1691518..1691928 (-) 411 WP_205871844.1 hypothetical protein -
  JW886_RS08380 (JW886_08380) - 1692080..1692256 (-) 177 WP_155724404.1 hypothetical protein -

Sequence

Protein


Download         Length: 688 a.a.        Molecular weight: 78887.96 Da        Isoelectric Point: 10.4067

>NTDB_id=541222 JW886_RS08355 WP_338092707.1 1686242..1688308(-) (comEC) [Lactococcus taiwanensis strain K_LL004]
MFFPLLLIFGIYFYLFNAYHSQKMALPEVAFHQITPRIDTLQVNGDLLSFRGRVHDRNYQVYATLQSKKEQTFFKNLAQN
CRISFTGNLEKPAAQRNFEGFDEQKYYSNQNIYRQIKIRQINAVKLTHNFNIWLLRRKGIVWAQSHFPRPMSSYMTGLLF
GYLGKDFSQMTTIYSALGIIHLFALSGMQVNFFVEVLRKILLKIGIRLEFIPFFKFLFSIFYAILTGFSLSVLRALFQKN
IPAKGLDNMAITTLGLLLVYPGFLLDKGGQLTLLYAFTISMLQQFSFTKSNIREALFKTFALNLIAFPLLIFDFFSFQPL
SIILTIGFGLIFDKIMLPLLLITFLLSLTGLSVNLNVLFLLLEKMMRHLYQWFSYTPVFGKPSLIGLLGLFLTAGLLVDA
LRKKKLRFFCAFSLLLILFFVKHPVAPTITMIDVGQGDSILLQDRWNQETVLIDTGGRLTLPQPKWKKAHFSTNADNTLI
PYLKAEGISTLDHLILTHTDADHVGDFLTLARTIKIRDVWVSPGELKVPTFVHQLKRAQLPIHIVKSGDKLPIFNGHLEI
LSKGYTHKGDNDDSIVTYGDFFNKKFLFTGDLEQEGELKLLKAYPRLKVDVLKVGHHGSKTSSNPYFIRQIDPQLALISV
GKKNRYGHPNQETLATLKKAQIKILRTDQVGAVQLIYHHRKWQVKTVR

Nucleotide


Download         Length: 2067 bp        

>NTDB_id=541222 JW886_RS08355 WP_338092707.1 1686242..1688308(-) (comEC) [Lactococcus taiwanensis strain K_LL004]
GTGTTTTTTCCTCTTCTTTTAATCTTTGGTATCTATTTTTATTTATTCAATGCTTACCATAGTCAAAAAATGGCCCTTCC
TGAGGTTGCTTTTCATCAAATAACCCCTCGTATAGATACCCTTCAAGTCAATGGTGATTTGCTTAGCTTTCGTGGGAGAG
TTCACGATCGAAATTACCAAGTCTATGCCACACTTCAATCTAAAAAAGAACAAACTTTCTTTAAAAATTTAGCTCAAAAT
TGTCGGATCAGTTTCACAGGAAACCTCGAAAAACCAGCAGCGCAACGCAATTTTGAAGGGTTTGATGAACAAAAATACTA
TTCCAATCAGAACATCTACAGACAGATTAAAATCAGACAAATTAACGCTGTAAAGTTAACGCATAATTTTAACATTTGGC
TCCTAAGACGTAAGGGGATTGTCTGGGCACAATCCCATTTTCCTCGCCCGATGTCCAGCTATATGACTGGTCTTCTTTTT
GGTTATTTAGGGAAGGACTTTAGTCAGATGACTACGATTTACAGTGCCCTTGGAATTATCCACCTCTTTGCCCTTTCCGG
TATGCAAGTCAATTTTTTTGTAGAAGTATTGCGTAAAATTTTGCTAAAAATTGGAATAAGGCTTGAATTTATTCCCTTCT
TTAAATTCTTATTTTCTATCTTTTATGCTATTCTGACAGGTTTTTCACTCTCAGTACTTCGTGCGCTCTTTCAAAAAAAT
ATCCCTGCTAAAGGTTTGGACAATATGGCAATTACCACACTGGGCTTACTTTTAGTTTACCCAGGATTTCTGTTAGATAA
AGGCGGGCAACTAACACTTTTGTATGCTTTTACTATAAGTATGCTCCAGCAATTTTCATTTACAAAAAGTAACATACGTG
AAGCTTTATTTAAAACGTTTGCATTAAATCTAATTGCCTTCCCCCTACTGATCTTTGATTTTTTTAGTTTTCAACCTCTC
TCAATTATTTTGACAATTGGTTTTGGCTTAATTTTTGATAAGATCATGCTTCCTCTATTATTGATCACCTTTTTATTATC
TCTGACAGGTCTGTCAGTAAATTTGAACGTACTATTTTTACTACTAGAGAAAATGATGCGTCACCTTTACCAGTGGTTCT
CCTATACACCAGTTTTTGGCAAACCGAGTCTCATTGGGCTTTTAGGTTTATTCTTGACAGCTGGACTTTTAGTCGATGCC
CTGCGAAAGAAAAAATTACGATTTTTTTGTGCTTTTTCTCTCTTGTTGATTTTATTTTTTGTCAAACATCCTGTAGCGCC
GACTATCACGATGATAGATGTGGGCCAGGGTGATAGTATTTTATTGCAGGATCGGTGGAATCAAGAAACGGTACTTATTG
ATACAGGTGGACGTCTTACCTTACCTCAGCCAAAATGGAAAAAGGCACACTTCTCTACAAATGCAGATAACACACTTATT
CCTTATTTAAAAGCTGAGGGGATTTCAACACTTGATCACCTGATTTTAACGCATACTGATGCGGATCACGTTGGCGATTT
TTTAACGTTGGCACGAACTATAAAAATAAGGGATGTTTGGGTAAGTCCAGGAGAGTTGAAAGTACCCACTTTTGTTCACC
AGCTTAAAAGAGCTCAGCTTCCAATTCATATTGTGAAGAGCGGGGATAAGCTTCCTATTTTTAATGGTCATTTAGAAATT
CTTTCCAAGGGCTATACGCATAAAGGGGATAACGACGATTCTATTGTTACTTATGGCGATTTTTTTAATAAAAAATTTTT
ATTTACGGGAGATTTAGAACAAGAAGGAGAGCTTAAACTTTTAAAAGCATACCCTCGCCTAAAAGTAGATGTCTTAAAAG
TCGGACATCATGGAAGTAAAACGAGTTCTAATCCCTACTTTATTAGACAAATTGACCCGCAATTGGCTCTTATTTCTGTT
GGAAAGAAGAATCGATATGGTCATCCCAATCAAGAGACACTCGCTACGCTGAAAAAAGCTCAGATCAAAATCTTACGTAC
AGATCAAGTAGGTGCAGTTCAACTCATATATCATCATCGAAAATGGCAAGTAAAAACTGTAAGATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(58-123)

Competence protein (Competence)

(158-402)

Metallo-beta-lactamase superfamily (Lactamase_B)

(434-634)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

58.721

100

0.587
  comEC/celB Streptococcus mitis SK321

43.022

100

0.435
  comEC/celB Streptococcus mitis NCTC 12261

43.208

100

0.435
  comEC/celB Streptococcus pneumoniae R6

42.486

100

0.427
  comEC/celB Streptococcus pneumoniae Rx1

42.486

100

0.427
  comEC/celB Streptococcus pneumoniae D39

42.486

100

0.427
  comEC/celB Streptococcus pneumoniae TIGR4

41.908

100

0.422