NTDB

Overview

Name	comFC/cflB	Type	Machinery gene
Locus tag	JW886_RS05385	Genome accession	NZ_CP070872
Coordinates	1080966..1081613 (-)	Length	215 a.a.
NCBI ID	WP_205871491.1	Uniprot ID	A0AA45KEN1
Organism	Lactococcus taiwanensis strain K_LL004
Function	ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1075966..1086613

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JW886_RS05350 (JW886_05350)	rplU	1077183..1077497 (+)	315	WP_003130644.1	50S ribosomal protein L21	-
JW886_RS05355 (JW886_05355)	-	1077500..1077835 (+)	336	WP_075524643.1	ribosomal-processing cysteine protease Prp	-
JW886_RS05360 (JW886_05360)	rpmA	1077837..1078121 (+)	285	WP_003130646.1	50S ribosomal protein L27	-
JW886_RS05365 (JW886_05365)	-	1078346..1079299 (+)	954	WP_205272490.1	PhoH family protein	-
JW886_RS05370 (JW886_05370)	ybeY	1079394..1079888 (+)	495	WP_205871489.1	rRNA maturation RNase YbeY	-
JW886_RS05375 (JW886_05375)	-	1079872..1080327 (+)	456	WP_082272278.1	diacylglycerol kinase family protein	-
JW886_RS05380 (JW886_05380)	-	1080342..1080908 (+)	567	WP_205871490.1	nucleotidyltransferase family protein	-
JW886_RS05385 (JW886_05385)	comFC/cflB	1080966..1081613 (-)	648	WP_205871491.1	ComF family protein	Machinery gene
JW886_RS05390 (JW886_05390)	comFA	1081610..1082926 (-)	1317	WP_205871492.1	DEAD/DEAH box helicase	Machinery gene
JW886_RS05395 (JW886_05395)	-	1082983..1083612 (+)	630	WP_205272486.1	YigZ family protein	-
JW886_RS05400 (JW886_05400)	-	1083691..1084710 (+)	1020	WP_205871493.1	DUF475 domain-containing protein	-
JW886_RS05405 (JW886_05405)	-	1084796..1085737 (+)	942	WP_205871494.1	zinc-binding dehydrogenase	-

Sequence

Protein

Download Length: 215 a.a. Molecular weight: 24825.86 Da Isoelectric Point: 8.9665

                                >NTDB_id=541209 JW886_RS05385 WP_205871491.1 1080966..1081613(-) (comFC/cflB) [Lactococcus taiwanensis strain K_LL004]

MNCLICQAKALTPSIDFQALITLKSNPSYLCLTCKNTFIKIGADHCPRCYKSGEKEICQDCQEWERKGIIINHQAIFKYN

GSMQQFFSRYKFMGDYQLHQVFKSYFKFKKEFTIVPIPLSPERYQVRGFNQVAAFMEKLPLQHLLTKKESQPQSSLTREE

RLTHTNPFQIKENSSIPEKIIVVDDIYTTGATLVHACKTLKEAGCNTVKTFSLCR

Nucleotide

Download Length: 648 bp

                                >NTDB_id=541209 JW886_RS05385 WP_205871491.1 1080966..1081613(-) (comFC/cflB) [Lactococcus taiwanensis strain K_LL004]

ATGAATTGTTTAATCTGCCAAGCCAAAGCGCTTACACCCTCAATTGATTTTCAAGCACTTATCACTCTGAAGAGCAATCC

TTCTTATCTCTGTTTGACTTGTAAAAATACATTTATAAAAATTGGGGCGGACCATTGCCCACGCTGCTATAAATCTGGAG

AGAAAGAAATCTGCCAAGACTGTCAAGAATGGGAACGAAAAGGAATTATAATCAATCATCAGGCAATTTTTAAATATAAT

GGCTCAATGCAACAGTTTTTTAGTCGCTACAAATTCATGGGTGATTATCAGTTGCATCAAGTGTTTAAAAGTTACTTTAA

ATTCAAAAAGGAGTTTACAATTGTTCCTATTCCTTTAAGTCCAGAGCGTTATCAAGTGCGAGGCTTTAACCAGGTTGCAG

CTTTTATGGAAAAACTCCCTCTCCAACATCTTCTTACAAAAAAAGAAAGCCAGCCACAAAGCTCACTTACACGCGAAGAA

CGATTGACCCACACCAACCCTTTCCAAATAAAGGAAAACAGCAGTATTCCAGAAAAAATAATAGTAGTGGACGATATTTA

TACCACTGGAGCTACTCTGGTTCATGCCTGTAAGACATTAAAAGAAGCTGGATGCAACACTGTCAAGACCTTCTCACTCT

GTCGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(136-214)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comFC/cflB	Streptococcus mitis SK321	47.059	100	0.484
comFC/cflB	Streptococcus mitis NCTC 12261	47.059	100	0.484
comFC/cflB	Streptococcus pneumoniae R6	46.606	100	0.479
comFC/cflB	Streptococcus pneumoniae TIGR4	46.606	100	0.479
comFC/cflB	Streptococcus pneumoniae Rx1	46.606	100	0.479
comFC/cflB	Streptococcus pneumoniae D39	46.606	100	0.479
comFC	Bacillus subtilis subsp. subtilis str. 168	35.088	100	0.372
comFC	Lactococcus lactis subsp. cremoris KW2	58.209	62.326	0.363

Detailed information NTG0541209