Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   JW886_RS05390 Genome accession   NZ_CP070872
Coordinates   1081610..1082926 (-) Length   438 a.a.
NCBI ID   WP_205871492.1    Uniprot ID   A0AA45KG72
Organism   Lactococcus taiwanensis strain K_LL004     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1076610..1087926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW886_RS05350 (JW886_05350) rplU 1077183..1077497 (+) 315 WP_003130644.1 50S ribosomal protein L21 -
  JW886_RS05355 (JW886_05355) - 1077500..1077835 (+) 336 WP_075524643.1 ribosomal-processing cysteine protease Prp -
  JW886_RS05360 (JW886_05360) rpmA 1077837..1078121 (+) 285 WP_003130646.1 50S ribosomal protein L27 -
  JW886_RS05365 (JW886_05365) - 1078346..1079299 (+) 954 WP_205272490.1 PhoH family protein -
  JW886_RS05370 (JW886_05370) ybeY 1079394..1079888 (+) 495 WP_205871489.1 rRNA maturation RNase YbeY -
  JW886_RS05375 (JW886_05375) - 1079872..1080327 (+) 456 WP_082272278.1 diacylglycerol kinase family protein -
  JW886_RS05380 (JW886_05380) - 1080342..1080908 (+) 567 WP_205871490.1 nucleotidyltransferase family protein -
  JW886_RS05385 (JW886_05385) comFC/cflB 1080966..1081613 (-) 648 WP_205871491.1 ComF family protein Machinery gene
  JW886_RS05390 (JW886_05390) comFA 1081610..1082926 (-) 1317 WP_205871492.1 DEAD/DEAH box helicase Machinery gene
  JW886_RS05395 (JW886_05395) - 1082983..1083612 (+) 630 WP_205272486.1 YigZ family protein -
  JW886_RS05400 (JW886_05400) - 1083691..1084710 (+) 1020 WP_205871493.1 DUF475 domain-containing protein -
  JW886_RS05405 (JW886_05405) - 1084796..1085737 (+) 942 WP_205871494.1 zinc-binding dehydrogenase -
  JW886_RS05410 (JW886_05410) glyQ 1085964..1086917 (+) 954 WP_075524651.1 glycine--tRNA ligase subunit alpha -

Sequence

Protein


Download         Length: 438 a.a.        Molecular weight: 50249.19 Da        Isoelectric Point: 10.2713

>NTDB_id=541210 JW886_RS05390 WP_205871492.1 1081610..1082926(-) (comFA) [Lactococcus taiwanensis strain K_LL004]
MEQFYGRLLLENDLKATDQPVSDNKDKFLITPQKVLKHAKVTKIQGMFSVNKRQIQCNRCGSLHFKHEVQLPLGCFYCPT
CINLGRVRSDEWLYAFAQEEFQAGHYLRWRGKLTPAQQNIADQLVSNSKKHFHTLVRAVTGAGKTEMTYPLIDQFLKSGK
GVAFVSPRIDVCIEIHNRLSHDFSCAIPLLYGHGKSYFRSPLVVATTHQLLRFQAAFDLIIVDEVDAFPFSESPYLYFAL
KKALKKEPQLLYLTATSTNYLEQQIKNGTLKQLELNQRFHQSPLILPRFFWHTQLIKKIKKQRKTGFPLLIFAAEIQAGQ
LLTQKLQKNFPHEKIACVSSKSSLRQEYIQQFRQGELDILVSTTILERGVTFPKVDVFVNHAEHSNFTKSSLIQMAGRVG
RSSERPNGLVYFFHEGRTRAMTKARQEIKRSNLKGGLS

Nucleotide


Download         Length: 1317 bp        

>NTDB_id=541210 JW886_RS05390 WP_205871492.1 1081610..1082926(-) (comFA) [Lactococcus taiwanensis strain K_LL004]
ATGGAACAATTTTATGGACGACTCCTCTTAGAAAACGATCTAAAAGCTACTGACCAACCTGTCAGTGATAATAAAGATAA
ATTTCTTATAACTCCCCAAAAGGTTTTGAAACACGCTAAAGTAACAAAAATCCAAGGAATGTTTTCAGTTAACAAACGAC
AGATACAATGCAACCGCTGTGGCAGCCTTCATTTCAAACATGAGGTCCAACTCCCTTTGGGGTGTTTTTATTGCCCTACT
TGTATCAATTTAGGGAGAGTGCGCTCTGATGAATGGCTTTATGCTTTTGCTCAAGAAGAGTTTCAAGCTGGCCATTATTT
GAGATGGAGAGGAAAATTGACACCCGCTCAACAAAATATTGCTGACCAACTGGTCAGTAATAGCAAAAAACACTTTCATA
CATTAGTACGCGCTGTGACTGGCGCTGGTAAAACAGAGATGACTTATCCTCTCATTGATCAATTTCTTAAAAGTGGAAAA
GGCGTGGCTTTTGTGAGTCCTAGAATAGATGTTTGCATAGAAATACATAACAGATTAAGTCACGACTTTTCCTGCGCTAT
TCCTCTCCTTTATGGGCATGGAAAGTCTTATTTTCGTTCCCCTCTTGTTGTCGCAACAACTCATCAACTCCTCCGCTTCC
AAGCAGCCTTTGACTTAATTATTGTGGATGAAGTGGATGCCTTTCCATTCTCTGAAAGTCCTTATCTCTATTTTGCACTG
AAAAAGGCGCTGAAAAAAGAGCCACAACTTCTTTATCTCACAGCTACTTCAACGAATTATTTAGAGCAGCAGATAAAAAA
TGGGACGTTAAAACAACTGGAGCTTAATCAGCGTTTCCATCAGTCGCCCCTCATTTTACCACGCTTTTTTTGGCACACAC
AACTTATCAAGAAGATAAAAAAACAGCGCAAAACAGGTTTCCCATTACTCATTTTTGCAGCGGAAATTCAGGCAGGGCAA
CTTTTAACTCAAAAATTACAAAAAAATTTCCCTCATGAGAAAATAGCGTGTGTCTCTTCTAAAAGTTCTTTACGACAGGA
GTATATCCAACAATTTCGCCAAGGAGAATTAGATATTCTCGTCTCTACAACCATTCTTGAGCGAGGAGTTACTTTCCCTA
AAGTTGATGTTTTTGTTAACCATGCCGAGCATTCAAATTTTACAAAATCATCTTTAATACAAATGGCTGGACGTGTCGGA
CGCTCGTCTGAACGCCCTAATGGTCTCGTTTATTTTTTCCACGAAGGACGCACTAGAGCAATGACGAAAGCAAGACAAGA
AATTAAAAGAAGTAATCTTAAAGGGGGCCTCTCATGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(112-256)

Helicase conserved C-terminal domain (Helicase_C)

(297-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Lactococcus lactis subsp. cremoris KW2

57.538

90.868

0.523
  comFA/cflA Streptococcus mitis SK321

47.875

100

0.489
  comFA/cflA Streptococcus pneumoniae Rx1

47.875

100

0.489
  comFA/cflA Streptococcus pneumoniae D39

47.875

100

0.489
  comFA/cflA Streptococcus pneumoniae R6

47.875

100

0.489
  comFA/cflA Streptococcus pneumoniae TIGR4

47.875

100

0.489
  comFA/cflA Streptococcus mitis NCTC 12261

46.98

100

0.479
  comFA Bacillus subtilis subsp. subtilis str. 168

39.512

93.607

0.37