Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   JW886_RS03795 Genome accession   NZ_CP070872
Coordinates   750662..751261 (-) Length   199 a.a.
NCBI ID   WP_075524494.1    Uniprot ID   A0AA45KJS1
Organism   Lactococcus taiwanensis strain K_LL004     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 745662..756261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW886_RS03785 (JW886_03785) - 745792..747036 (+) 1245 WP_075524492.1 FtsW/RodA/SpoVE family cell cycle protein -
  JW886_RS03790 (JW886_03790) - 747172..750585 (+) 3414 WP_205271607.1 pyruvate carboxylase -
  JW886_RS03795 (JW886_03795) clpP 750662..751261 (-) 600 WP_075524494.1 ATP-dependent Clp protease proteolytic subunit Regulator
  JW886_RS03800 (JW886_03800) - 751455..751985 (+) 531 WP_205872345.1 hypothetical protein -
  JW886_RS03805 (JW886_03805) spx 752161..752559 (+) 399 WP_058213129.1 transcriptional regulator Spx -
  JW886_RS03810 (JW886_03810) - 752784..753410 (+) 627 WP_205872346.1 TetR/AcrR family transcriptional regulator -
  JW886_RS03815 (JW886_03815) - 753513..754922 (+) 1410 WP_205872347.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21967.15 Da        Isoelectric Point: 4.7423

>NTDB_id=541207 JW886_RS03795 WP_075524494.1 750662..751261(-) (clpP) [Lactococcus taiwanensis strain K_LL004]
MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVD
TMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGAGQGTQQTDMAIVAEQLLKTRKRLEQILADN
SGKSLEQIHKDAERDHWMDAKETLEYGFIDEIMENNSLK

Nucleotide


Download         Length: 600 bp        

>NTDB_id=541207 JW886_RS03795 WP_075524494.1 750662..751261(-) (clpP) [Lactococcus taiwanensis strain K_LL004]
ATGGGTTACTTAGTCCCTACTGTTATTGAACAATCAAGCCGTGGTGAACGCGCTTATGATATCTACTCACGTCTTTTGAA
AGACCGTATCATCATGTTAACAGGTCCAGTCGAAGACGGTATGGCCAACAGTATTATTGCACAACTACTATTTCTTGATG
CGCAAGATAATACGAAAGACATCTACCTCTATGTCAATACGCCTGGGGGGTCTGTGTCAGCTGGGCTTGCCATTGTCGAC
ACAATGAATTTTATCAAATCTGACGTACAAACGATTGTAATGGGAATGGCTGCTTCTATGGGAACAATCATCGCCTCTAG
TGGTACTAAAGGTAAACGTTTCATGTTACCAAACGCTGAGTACCTCATCCACCAACCAATGGGTGGTGCAGGACAAGGTA
CTCAACAAACAGATATGGCCATCGTTGCGGAACAACTTTTAAAAACACGTAAACGTCTGGAACAAATCCTAGCTGATAAT
TCTGGTAAATCTTTGGAACAAATTCATAAGGATGCTGAACGTGATCACTGGATGGACGCTAAAGAAACTTTAGAATATGG
TTTTATTGATGAAATCATGGAAAATAATTCTTTAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

98.995

100

0.99
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

98.492

100

0.985
  clpP Streptococcus mutans UA159

88.265

98.492

0.869
  clpP Streptococcus thermophilus LMD-9

87.245

98.492

0.859
  clpP Streptococcus thermophilus LMG 18311

87.245

98.492

0.859
  clpP Streptococcus pyogenes MGAS315

86.735

98.492

0.854
  clpP Streptococcus pyogenes JRS4

86.735

98.492

0.854
  clpP Streptococcus pneumoniae D39

84.694

98.492

0.834
  clpP Streptococcus pneumoniae TIGR4

84.694

98.492

0.834
  clpP Streptococcus pneumoniae R6

84.694

98.492

0.834
  clpP Streptococcus pneumoniae Rx1

84.694

98.492

0.834
  clpP Bacillus subtilis subsp. subtilis str. 168

58.421

95.477

0.558
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.995

96.985

0.553