Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LLZ83_RS01090 Genome accession   NZ_CP086130
Coordinates   188936..189364 (+) Length   142 a.a.
NCBI ID   WP_000793381.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain MIN-180     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 183936..194364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLZ83_RS01075 (LLZ83_01075) - 186493..186858 (+) 366 WP_000285373.1 DUF1033 family protein -
  LLZ83_RS01080 (LLZ83_01080) comGA 187031..188002 (+) 972 WP_000250808.1 competence type IV pilus ATPase ComGA Machinery gene
  LLZ83_RS01085 (LLZ83_01085) comGB 187896..188939 (+) 1044 WP_223295592.1 competence type IV pilus assembly protein ComGB Machinery gene
  LLZ83_RS01090 (LLZ83_01090) comGD 188936..189364 (+) 429 WP_000793381.1 competence type IV pilus minor pilin ComGD Machinery gene
  LLZ83_RS01095 (LLZ83_01095) comGE 189336..189635 (+) 300 WP_001867089.1 competence type IV pilus minor pilin ComGE Machinery gene
  LLZ83_RS01100 (LLZ83_01100) comGF 189589..190050 (+) 462 WP_001874060.1 competence type IV pilus minor pilin ComGF Machinery gene
  LLZ83_RS01105 (LLZ83_01105) comGG 190028..190399 (+) 372 WP_000601104.1 competence type IV pilus minor pilin ComGG Machinery gene
  LLZ83_RS01110 (LLZ83_01110) comGH 190514..191488 (+) 975 WP_001008570.1 class I SAM-dependent methyltransferase Machinery gene
  LLZ83_RS01115 (LLZ83_01115) - 191520..192713 (+) 1194 WP_000047535.1 acetate kinase -
  LLZ83_RS01120 (LLZ83_01120) - 192864..193070 (+) 207 WP_000798242.1 helix-turn-helix transcriptional regulator -
  LLZ83_RS01125 (LLZ83_01125) - 193129..193266 (+) 138 WP_001867090.1 hypothetical protein -
  LLZ83_RS01130 (LLZ83_01130) - 193307..193762 (+) 456 WP_000905674.1 hypothetical protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16493.15 Da        Isoelectric Point: 10.0345

>NTDB_id=540611 LLZ83_RS01090 WP_000793381.1 188936..189364(+) (comGD) [Streptococcus agalactiae strain MIN-180]
MKNLLLKCKDKKVKAFTLLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHN
YLENTYERLYLPKTVKVVKSDTLAFDANGGNSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN

Nucleotide


Download         Length: 429 bp        

>NTDB_id=540611 LLZ83_RS01090 WP_000793381.1 188936..189364(+) (comGD) [Streptococcus agalactiae strain MIN-180]
ATGAAAAATTTATTGTTAAAATGTAAGGATAAGAAGGTTAAAGCATTTACACTTTTAGAGAGCCTTATTGTATTATCAGT
AGTGGCATTTATGACGTTAGTATTTTCAACATCATTTAATAATATTTTTAGGCAGGTTGAAGAAACAATTTTCTTCATAT
CCTTTGAACATCTTTATAGAGATACTCAGAAATTGAGTGCATTTGGTCAGAAGAAACAAACCCTTACAATCTCTCATAAT
TATCTCGAAAATACTTATGAGAGACTTTATTTACCTAAAACTGTAAAAGTAGTCAAAAGTGACACACTTGCATTTGACGC
TAATGGAGGGAATTCAAGCTTGGCAAAAATTCAATTTGAATGTTATAGAAAAACTGTTACGTATCAATTATATATAGGAA
GTGGTAATTATCGTAAGAAAGAAAATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA140

52.273

92.958

0.486
  comGD Streptococcus mutans UA159

52.273

92.958

0.486
  comGD Streptococcus gordonii str. Challis substr. CH1

43.662

100

0.437
  comGD/cglD Streptococcus mitis NCTC 12261

41.045

94.366

0.387
  comGD/cglD Streptococcus pneumoniae TIGR4

43.307

89.437

0.387
  comGD/cglD Streptococcus mitis SK321

43.307

89.437

0.387
  comGD/cglD Streptococcus pneumoniae Rx1

42.52

89.437

0.38
  comGD/cglD Streptococcus pneumoniae D39

42.52

89.437

0.38
  comGD/cglD Streptococcus pneumoniae R6

42.52

89.437

0.38