Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   LLZ83_RS01105 Genome accession   NZ_CP086130
Coordinates   190028..190399 (+) Length   123 a.a.
NCBI ID   WP_000601104.1    Uniprot ID   Q8E233
Organism   Streptococcus agalactiae strain MIN-180     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 185028..195399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLZ83_RS01075 (LLZ83_01075) - 186493..186858 (+) 366 WP_000285373.1 DUF1033 family protein -
  LLZ83_RS01080 (LLZ83_01080) comGA 187031..188002 (+) 972 WP_000250808.1 competence type IV pilus ATPase ComGA Machinery gene
  LLZ83_RS01085 (LLZ83_01085) comGB 187896..188939 (+) 1044 WP_223295592.1 competence type IV pilus assembly protein ComGB Machinery gene
  LLZ83_RS01090 (LLZ83_01090) comGD 188936..189364 (+) 429 WP_000793381.1 competence type IV pilus minor pilin ComGD Machinery gene
  LLZ83_RS01095 (LLZ83_01095) comGE 189336..189635 (+) 300 WP_001867089.1 competence type IV pilus minor pilin ComGE Machinery gene
  LLZ83_RS01100 (LLZ83_01100) comGF 189589..190050 (+) 462 WP_001874060.1 competence type IV pilus minor pilin ComGF Machinery gene
  LLZ83_RS01105 (LLZ83_01105) comGG 190028..190399 (+) 372 WP_000601104.1 competence type IV pilus minor pilin ComGG Machinery gene
  LLZ83_RS01110 (LLZ83_01110) comGH 190514..191488 (+) 975 WP_001008570.1 class I SAM-dependent methyltransferase Machinery gene
  LLZ83_RS01115 (LLZ83_01115) - 191520..192713 (+) 1194 WP_000047535.1 acetate kinase -
  LLZ83_RS01120 (LLZ83_01120) - 192864..193070 (+) 207 WP_000798242.1 helix-turn-helix transcriptional regulator -
  LLZ83_RS01125 (LLZ83_01125) - 193129..193266 (+) 138 WP_001867090.1 hypothetical protein -
  LLZ83_RS01130 (LLZ83_01130) - 193307..193762 (+) 456 WP_000905674.1 hypothetical protein -
  LLZ83_RS01135 (LLZ83_01135) - 193831..194496 (+) 666 WP_000008111.1 CPBP family intramembrane glutamic endopeptidase -
  LLZ83_RS01140 (LLZ83_01140) proC 194517..195287 (-) 771 WP_001867096.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13879.09 Da        Isoelectric Point: 10.0693

>NTDB_id=540614 LLZ83_RS01105 WP_000601104.1 190028..190399(+) (comGG) [Streptococcus agalactiae strain MIN-180]
MILKKKLKAGILLQAIVLAAVFTLVLQFYLARILATERQYHSQIEASKAYLTAQLAYKTIEGDSISGKCYFTGGYASYLQ
EGNYLQVKVTLDKGGNYNHKFYRKTDTLQVPLKSNDNKASHKH

Nucleotide


Download         Length: 372 bp        

>NTDB_id=540614 LLZ83_RS01105 WP_000601104.1 190028..190399(+) (comGG) [Streptococcus agalactiae strain MIN-180]
ATGATTTTAAAGAAGAAACTTAAAGCTGGCATCCTTTTGCAAGCTATTGTATTGGCTGCTGTATTTACACTCGTCTTACA
GTTTTATCTAGCAAGAATATTGGCAACAGAAAGACAGTATCATAGCCAAATTGAAGCAAGTAAAGCTTATTTAACAGCGC
AGTTAGCTTATAAAACAATAGAAGGTGACTCCATATCAGGAAAATGTTATTTTACAGGAGGATATGCTTCATACCTCCAA
GAAGGGAACTATTTACAAGTTAAGGTTACATTGGATAAGGGAGGAAACTATAACCATAAGTTTTATCGTAAAACAGACAC
TCTCCAAGTACCTCTCAAGTCTAATGATAATAAAGCAAGCCATAAACATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8E233

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

44.554

82.114

0.366
  comGG Streptococcus mutans UA159

44.554

82.114

0.366