Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   LLZ83_RS01095 Genome accession   NZ_CP086130
Coordinates   189336..189635 (+) Length   99 a.a.
NCBI ID   WP_001867089.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain MIN-180     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 184336..194635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLZ83_RS01075 (LLZ83_01075) - 186493..186858 (+) 366 WP_000285373.1 DUF1033 family protein -
  LLZ83_RS01080 (LLZ83_01080) comGA 187031..188002 (+) 972 WP_000250808.1 competence type IV pilus ATPase ComGA Machinery gene
  LLZ83_RS01085 (LLZ83_01085) comGB 187896..188939 (+) 1044 WP_223295592.1 competence type IV pilus assembly protein ComGB Machinery gene
  LLZ83_RS01090 (LLZ83_01090) comGD 188936..189364 (+) 429 WP_000793381.1 competence type IV pilus minor pilin ComGD Machinery gene
  LLZ83_RS01095 (LLZ83_01095) comGE 189336..189635 (+) 300 WP_001867089.1 competence type IV pilus minor pilin ComGE Machinery gene
  LLZ83_RS01100 (LLZ83_01100) comGF 189589..190050 (+) 462 WP_001874060.1 competence type IV pilus minor pilin ComGF Machinery gene
  LLZ83_RS01105 (LLZ83_01105) comGG 190028..190399 (+) 372 WP_000601104.1 competence type IV pilus minor pilin ComGG Machinery gene
  LLZ83_RS01110 (LLZ83_01110) comGH 190514..191488 (+) 975 WP_001008570.1 class I SAM-dependent methyltransferase Machinery gene
  LLZ83_RS01115 (LLZ83_01115) - 191520..192713 (+) 1194 WP_000047535.1 acetate kinase -
  LLZ83_RS01120 (LLZ83_01120) - 192864..193070 (+) 207 WP_000798242.1 helix-turn-helix transcriptional regulator -
  LLZ83_RS01125 (LLZ83_01125) - 193129..193266 (+) 138 WP_001867090.1 hypothetical protein -
  LLZ83_RS01130 (LLZ83_01130) - 193307..193762 (+) 456 WP_000905674.1 hypothetical protein -
  LLZ83_RS01135 (LLZ83_01135) - 193831..194496 (+) 666 WP_000008111.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11250.38 Da        Isoelectric Point: 10.6118

>NTDB_id=540612 LLZ83_RS01095 WP_001867089.1 189336..189635(+) (comGE) [Streptococcus agalactiae strain MIN-180]
MVIIVRKKIRAYILLESLVGLAILVTITSLVISEINRQQSHIARRQHEQEVLILARMAVQTDQKILEANGVNIRIEESKN
KIVLFEGNKEILHVSKVKG

Nucleotide


Download         Length: 300 bp        

>NTDB_id=540612 LLZ83_RS01095 WP_001867089.1 189336..189635(+) (comGE) [Streptococcus agalactiae strain MIN-180]
GTGGTAATTATCGTAAGAAAGAAAATTAGAGCCTATATTTTACTGGAAAGCCTAGTGGGATTAGCTATTTTAGTTACTAT
TACAAGTTTAGTAATAAGTGAAATCAATCGTCAACAATCTCATATTGCAAGAAGGCAACATGAGCAAGAAGTATTGATAT
TAGCTAGAATGGCTGTGCAAACTGATCAAAAAATATTAGAAGCAAATGGTGTTAATATTCGCATTGAAGAAAGTAAAAAT
AAAATTGTGCTCTTTGAAGGTAATAAGGAAATTTTGCACGTATCAAAAGTTAAGGGTTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

38.542

96.97

0.374
  comGE Streptococcus mutans UA159

38.542

96.97

0.374