Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   JTI58_RS14810 Genome accession   NZ_CP070490
Coordinates   3051584..3052843 (+) Length   419 a.a.
NCBI ID   WP_205442025.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain NEB1292     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3046584..3057843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTI58_RS14780 (JTI58_14780) - 3046665..3047966 (+) 1302 WP_205442020.1 pitrilysin family protein -
  JTI58_RS14785 (JTI58_14785) - 3047963..3048691 (+) 729 WP_205442021.1 SDR family oxidoreductase -
  JTI58_RS14790 (JTI58_14790) - 3048735..3048992 (+) 258 WP_004224939.1 DUF3243 domain-containing protein -
  JTI58_RS14795 (JTI58_14795) - 3049209..3049994 (+) 786 WP_026023397.1 DUF3388 domain-containing protein -
  JTI58_RS14800 (JTI58_14800) - 3050011..3050940 (+) 930 WP_205442023.1 helix-turn-helix domain-containing protein -
  JTI58_RS14805 (JTI58_14805) pgsA 3050988..3051566 (+) 579 WP_205442024.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JTI58_RS14810 (JTI58_14810) cinA 3051584..3052843 (+) 1260 WP_205442025.1 competence/damage-inducible protein A Machinery gene
  JTI58_RS14815 (JTI58_14815) recA 3053004..3054065 (+) 1062 WP_205442026.1 recombinase RecA Machinery gene
  JTI58_RS14820 (JTI58_14820) rny 3054590..3056149 (+) 1560 WP_205442027.1 ribonuclease Y -
  JTI58_RS14825 (JTI58_14825) - 3056266..3057063 (+) 798 WP_243456046.1 CpsB/CapC family capsule biosynthesis tyrosine phosphatase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45237.60 Da        Isoelectric Point: 4.7051

>NTDB_id=540156 JTI58_RS14810 WP_205442025.1 3051584..3052843(+) (cinA) [Lysinibacillus fusiformis strain NEB1292]
MNAEILAVGSELLLGQITNTNARFISSQLSELGINVFYHTVVGDNAKRLEQAIEVAESRADLIIFSGGLGPTKDDLTKET
IARHLGVSLEFDEVALTYIEQFFAKRGRPMTENNRKQALILAGSEVLANHHGMAPGMIFTKNDRTYILLPGPPKELEPMF
QFEAKPKLAAMFNDGGIIASHVMRFYGIGEAELEVQVQDILDAQTNPTVAPLASDGEVTLRVTAKAATEQQAGQLIAAKV
AEIQTLVGDYQYGVDDDSLASKTVEMLLDNELTIAAAESLTAGLFQSELAEIPGVGNALIGGVVTYAADAKVKQLGISQQ
LIDTHGVVSAECAAAMASAVRKKFATNIGIGLTGEAGPTAHDHQPVGTVWIGIAIDDEEPLTYLLHLSGMRNTNRLRAVK
FTCYYLMQLLEERGYTKRY

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=540156 JTI58_RS14810 WP_205442025.1 3051584..3052843(+) (cinA) [Lysinibacillus fusiformis strain NEB1292]
ATGAATGCTGAAATTCTTGCGGTTGGCTCAGAACTATTATTAGGTCAAATTACGAATACAAATGCGAGATTTATCTCAAG
TCAATTATCCGAGCTAGGCATAAACGTTTTTTATCACACCGTAGTTGGTGATAATGCGAAACGTCTAGAACAAGCTATCG
AAGTGGCAGAGTCTCGTGCAGATCTTATTATTTTTTCGGGAGGACTTGGACCTACGAAAGATGATTTAACAAAGGAAACG
ATTGCACGTCATCTTGGAGTTTCTCTTGAGTTTGATGAAGTAGCATTAACATATATTGAGCAATTTTTTGCTAAACGAGG
ACGTCCAATGACGGAAAATAATCGTAAACAGGCATTAATTTTAGCTGGAAGTGAAGTACTAGCCAATCACCACGGAATGG
CTCCAGGTATGATCTTCACAAAAAATGATCGCACTTATATTTTATTACCAGGACCTCCAAAAGAGTTAGAACCAATGTTT
CAATTTGAGGCTAAACCTAAACTGGCTGCGATGTTTAATGATGGAGGGATCATTGCATCACATGTTATGCGTTTTTATGG
AATTGGTGAGGCCGAGCTTGAAGTACAAGTTCAAGATATTTTAGATGCACAAACTAATCCAACAGTTGCCCCACTGGCTT
CTGATGGAGAGGTAACGTTACGCGTAACAGCCAAAGCCGCAACAGAGCAGCAAGCCGGGCAGCTTATTGCGGCAAAGGTT
GCAGAGATACAGACACTTGTTGGTGATTATCAATATGGTGTAGATGATGATTCTCTTGCCTCAAAAACGGTTGAAATGCT
ACTGGATAATGAGCTAACAATTGCGGCTGCAGAAAGTTTAACAGCTGGGTTATTTCAATCTGAGCTTGCGGAAATTCCAG
GAGTAGGAAATGCGCTTATAGGAGGCGTTGTTACCTATGCAGCTGATGCGAAAGTAAAACAGCTAGGCATATCACAGCAA
TTAATTGATACACATGGTGTTGTGAGTGCTGAGTGTGCAGCGGCAATGGCAAGCGCTGTTCGTAAGAAATTTGCTACAAA
TATTGGGATTGGTCTTACTGGAGAAGCAGGTCCTACAGCGCATGATCATCAGCCAGTAGGTACGGTTTGGATTGGTATTG
CCATCGATGATGAGGAGCCACTTACCTATTTACTTCATTTATCAGGCATGCGGAATACGAATCGACTCCGTGCGGTGAAA
TTTACATGCTATTATTTAATGCAGCTATTAGAAGAACGAGGCTACACAAAACGTTATTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.699

98.329

0.508
  cinA Streptococcus pneumoniae TIGR4

45.455

91.885

0.418
  cinA Streptococcus pneumoniae Rx1

45.455

91.885

0.418
  cinA Streptococcus pneumoniae R6

45.455

91.885

0.418
  cinA Streptococcus mitis SK321

45.692

91.408

0.418
  cinA Streptococcus pneumoniae D39

45.195

91.885

0.415
  cinA Streptococcus mitis NCTC 12261

44.909

91.408

0.411
  cinA Streptococcus mutans UA159

43.915

90.215

0.396