Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   JVB21_RS05445 Genome accession   NZ_CP070381
Coordinates   1087854..1088453 (+) Length   199 a.a.
NCBI ID   WP_075524494.1    Uniprot ID   A0AA45KJS1
Organism   Lactococcus taiwanensis strain K_LL001     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1082854..1093453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVB21_RS05425 (JVB21_05425) - 1084132..1085601 (-) 1470 WP_240188566.1 MDR family MFS transporter -
  JVB21_RS05430 (JVB21_05430) - 1085705..1086331 (-) 627 WP_205271606.1 TetR/AcrR family transcriptional regulator -
  JVB21_RS05435 (JVB21_05435) spx 1086556..1086954 (-) 399 WP_058213129.1 transcriptional regulator Spx -
  JVB21_RS05440 (JVB21_05440) - 1087130..1087660 (-) 531 WP_075524495.1 hypothetical protein -
  JVB21_RS05445 (JVB21_05445) clpP 1087854..1088453 (+) 600 WP_075524494.1 ATP-dependent Clp protease proteolytic subunit Regulator
  JVB21_RS05450 (JVB21_05450) - 1088529..1091942 (-) 3414 WP_205271607.1 pyruvate carboxylase -
  JVB21_RS05455 (JVB21_05455) - 1092078..1093322 (-) 1245 WP_205271608.1 FtsW/RodA/SpoVE family cell cycle protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21967.15 Da        Isoelectric Point: 4.7423

>NTDB_id=539544 JVB21_RS05445 WP_075524494.1 1087854..1088453(+) (clpP) [Lactococcus taiwanensis strain K_LL001]
MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVD
TMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGAGQGTQQTDMAIVAEQLLKTRKRLEQILADN
SGKSLEQIHKDAERDHWMDAKETLEYGFIDEIMENNSLK

Nucleotide


Download         Length: 600 bp        

>NTDB_id=539544 JVB21_RS05445 WP_075524494.1 1087854..1088453(+) (clpP) [Lactococcus taiwanensis strain K_LL001]
ATGGGTTACTTAGTCCCTACTGTTATTGAACAATCAAGCCGTGGTGAACGCGCTTATGATATCTACTCACGTCTTTTGAA
AGACCGTATCATCATGTTAACAGGTCCAGTCGAAGACGGTATGGCCAACAGTATTATTGCACAACTACTATTTCTTGATG
CGCAAGATAATACGAAAGACATCTACCTCTATGTCAATACGCCTGGGGGATCTGTCTCAGCTGGACTTGCCATTGTCGAC
ACAATGAATTTTATCAAATCTGACGTACAAACAATCGTAATGGGAATGGCTGCTTCTATGGGAACAATCATCGCCTCTAG
TGGTACTAAAGGTAAACGTTTCATGTTACCAAACGCTGAGTACCTCATCCACCAACCAATGGGTGGTGCAGGACAAGGTA
CTCAACAAACAGATATGGCCATCGTTGCGGAACAACTTTTAAAAACACGTAAACGTCTGGAACAAATCCTAGCTGATAAT
TCTGGTAAATCTTTGGAACAAATTCATAAGGATGCTGAACGTGACCACTGGATGGACGCTAAAGAAACTTTAGAATATGG
TTTTATTGATGAAATCATGGAAAATAATTCTTTAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

98.995

100

0.99
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

98.492

100

0.985
  clpP Streptococcus mutans UA159

88.265

98.492

0.869
  clpP Streptococcus thermophilus LMD-9

87.245

98.492

0.859
  clpP Streptococcus thermophilus LMG 18311

87.245

98.492

0.859
  clpP Streptococcus pyogenes MGAS315

86.735

98.492

0.854
  clpP Streptococcus pyogenes JRS4

86.735

98.492

0.854
  clpP Streptococcus pneumoniae D39

84.694

98.492

0.834
  clpP Streptococcus pneumoniae TIGR4

84.694

98.492

0.834
  clpP Streptococcus pneumoniae R6

84.694

98.492

0.834
  clpP Streptococcus pneumoniae Rx1

84.694

98.492

0.834
  clpP Bacillus subtilis subsp. subtilis str. 168

58.421

95.477

0.558
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.995

96.985

0.553