Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   JVB21_RS00295 Genome accession   NZ_CP070381
Coordinates   70328..70981 (+) Length   217 a.a.
NCBI ID   WP_205272087.1    Uniprot ID   -
Organism   Lactococcus taiwanensis strain K_LL001     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 65328..75981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVB21_RS00270 (JVB21_00270) - 65919..67097 (+) 1179 WP_082272355.1 SLC13 family permease -
  JVB21_RS00275 (JVB21_00275) - 67159..67335 (+) 177 WP_205272085.1 hypothetical protein -
  JVB21_RS00280 (JVB21_00280) - 67487..67897 (+) 411 WP_075526239.1 hypothetical protein -
  JVB21_RS00285 (JVB21_00285) - 67988..68908 (+) 921 WP_075526238.1 ABC transporter ATP-binding protein -
  JVB21_RS00290 (JVB21_00290) - 68911..70257 (+) 1347 WP_205272086.1 ABC transporter permease -
  JVB21_RS00295 (JVB21_00295) comEA 70328..70981 (+) 654 WP_205272087.1 helix-hairpin-helix domain-containing protein Machinery gene
  JVB21_RS00300 (JVB21_00300) comEC 70983..73172 (+) 2190 WP_338085396.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JVB21_RS00305 (JVB21_00305) - 73395..74171 (+) 777 WP_200407402.1 alpha/beta hydrolase -
  JVB21_RS00310 (JVB21_00310) - 74370..74585 (+) 216 WP_004255250.1 F0F1 ATP synthase subunit C -
  JVB21_RS00315 (JVB21_00315) atpB 74630..75343 (+) 714 WP_075526233.1 F0F1 ATP synthase subunit A -
  JVB21_RS00320 (JVB21_00320) atpF 75358..75864 (+) 507 WP_075526232.1 F0F1 ATP synthase subunit B -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 23375.40 Da        Isoelectric Point: 4.5546

>NTDB_id=539529 JVB21_RS00295 WP_205272087.1 70328..70981(+) (comEA) [Lactococcus taiwanensis strain K_LL001]
MEKIVEIIKENWKMMVLILVGVITGGIGYVLTQPKTPDQPAAVTQLENQPASSDTDQSVSKSENSISTSQIVVDLKGAVK
YPKVYRIAADERVDDLIQLAGGFTADADQRRVNLAAKLKDEEVVYVSKKGENSPEGVANTSDATDQPLTTSSAAKVNINT
ADLASLETLSGIGEKKAQDIIDYRTKNGNFQKLEDLGNVSGFGVKTLEKLKDSICID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=539529 JVB21_RS00295 WP_205272087.1 70328..70981(+) (comEA) [Lactococcus taiwanensis strain K_LL001]
ATGGAAAAAATAGTTGAAATAATCAAAGAAAATTGGAAAATGATGGTATTAATCCTGGTGGGAGTAATAACAGGTGGGAT
TGGCTATGTCCTTACTCAGCCTAAAACGCCGGATCAGCCAGCAGCGGTCACCCAGCTTGAAAATCAGCCAGCTTCAAGTG
ATACTGACCAGTCTGTCAGTAAAAGTGAAAATTCGATAAGCACTAGCCAGATCGTTGTGGATTTAAAAGGTGCGGTCAAA
TACCCCAAAGTTTATAGGATAGCAGCTGACGAGCGTGTTGATGACTTGATACAGTTGGCTGGTGGATTTACCGCAGATGC
AGATCAACGGAGAGTTAATCTTGCAGCTAAACTCAAAGATGAGGAAGTGGTGTACGTCAGTAAAAAAGGTGAGAATAGTC
CAGAAGGAGTGGCAAATACTTCAGATGCAACGGACCAACCGCTTACCACATCATCAGCAGCAAAAGTCAACATTAATACT
GCCGACCTAGCAAGTCTGGAGACCTTAAGCGGGATTGGTGAGAAGAAAGCTCAGGATATTATTGATTACCGTACTAAAAA
TGGTAATTTTCAGAAATTAGAAGATCTCGGCAATGTATCAGGATTTGGTGTGAAGACTTTAGAAAAATTGAAAGATAGTA
TTTGTATTGATTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(152-214)

SLBB domain (SLBB)

(72-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Lactococcus lactis subsp. cremoris KW2

51.786

100

0.535
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

39.462

100

0.406
  comEA/celA/cilE Streptococcus mitis SK321

39.462

100

0.406
  comEA/celA/cilE Streptococcus mitis NCTC 12261

39.013

100

0.401
  comEA/celA/cilE Streptococcus pneumoniae Rx1

38.565

100

0.396
  comEA/celA/cilE Streptococcus pneumoniae D39

38.565

100

0.396
  comEA/celA/cilE Streptococcus pneumoniae R6

38.565

100

0.396
  comEA Latilactobacillus sakei subsp. sakei 23K

36.797

100

0.392