Detailed information NTG0539349

Bioinformatically predicted

Overview

• Name: pilQ
• Type: Machinery gene
• Locus tag: JVX91_RS02470
• Genome accession: NZ_CP070356
• Coordinates: 531385..533526 (-)
• Length: 713 a.a.
• NCBI ID: WP_205337872.1
• Uniprot ID: -
• Organism: Pseudomonas sp. PDNC002
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	534101..543383	531385..533526	flank	575

Gene organization within MGE regions

Location: 531385..543383

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JVX91_RS02470 (JVX91_02470)	pilQ	531385..533526 (-)	2142	WP_205337872.1	type IV pilus secretin PilQ	Machinery gene
JVX91_RS02475 (JVX91_02475)	pilP	533580..534104 (-)	525	WP_205337873.1	type 4a pilus biogenesis lipoprotein PilP	-
JVX91_RS02480 (JVX91_02480)	pilO	534101..534745 (-)	645	WP_205337874.1	type 4a pilus biogenesis protein PilO	-
JVX91_RS02485 (JVX91_02485)	pilN	534742..535338 (-)	597	WP_205337875.1	type 4a pilus biogenesis protein PilN	-
JVX91_RS02490 (JVX91_02490)	pilM	535338..536402 (-)	1065	WP_205337876.1	pilus assembly protein PilM	Machinery gene
JVX91_RS02495 (JVX91_02495)	-	536588..539029 (+)	2442	WP_205337877.1	penicillin-binding protein 1A	-
JVX91_RS02500 (JVX91_02500)	-	539218..539685 (+)	468	WP_205337878.1	hypothetical protein	-
JVX91_RS02505 (JVX91_02505)	-	539679..540173 (-)	495	WP_081515415.1	M48 family metallopeptidase	-
JVX91_RS02510 (JVX91_02510)	-	540223..540993 (-)	771	WP_205337879.1	class I SAM-dependent methyltransferase	-
JVX91_RS02515 (JVX91_02515)	-	541031..541444 (-)	414	WP_205337880.1	hypothetical protein	-
JVX91_RS02520 (JVX91_02520)	fba	541539..542603 (-)	1065	WP_024764154.1	class II fructose-bisphosphate aldolase	-
JVX91_RS02525 (JVX91_02525)	-	542708..543046 (-)	339	WP_205337881.1	MliC family protein	-
JVX91_RS02530 (JVX91_02530)	-	543189..543383 (-)	195	WP_205337882.1	hypothetical protein	-

Sequence

Protein

• Length: 713 a.a.
• Molecular weight: 76014.04 Da
• Isoelectric Point: 5.2750

>NTDB_id=539349 JVX91_RS02470 WP_205337872.1 531385..533526(-) (pilQ) [Pseudomonas sp. PDNC002]
MNRVLSRLSISLLAAVFAPALLAANLQSVDVAALPGDRVELKLGFDEPIAAPRGYTIEQPARIALDLPGVQNKLGSKNRE
LGVGNARSLTVVEAKDRTRLIVNLTTLVPYSTRSDGSNLYIVVGGAGSAASANASAAPTSSASVARPAAPKPYIPAGKAI
RNVDFQRGEQGEGNVVIDLSDPTVSPDIQEQGGKIRLDFPRTQLPDNLRVRLDVKDFATPVQFVNASAAGDKASITIEPT
GLYDYLVYQTDNRMTVSIKPLTQDDAEKRKKDNFAYTGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITLRLQ
NVPWDQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELEAQKQISELAPLRRELIQVNYAKASDIAKLFQSVTGGA
PGAPTGGQGDVRGSITVDDRTNSIIAYQTQDRLDELRRIVSQLDIPVRQVMIEARIVEASVDYSKSLGVRWGGAFTFGNW
AAWGKDGNIGTGGSNGTSCGPFGGGGCTLPTTSNSPTPSVDLGATNATSGIGIGFVSNNAILDLQLSAMEKGGNGEVVSQ
PKVVTSDKETAKILKGSEIPYQEASSSGATSVSFKEAALSLEVTPQITPDNRIIMEVKVNKDEPDYANALNGVPPIKKNE
VNAKVLVNDGETIVIGGVFSNTQTKATDKVPFLGDVPVLGRLFRRDSVTDSKNELLVFLTPRIMNNQAIAVGR

Nucleotide

• Length: 2142 bp

>NTDB_id=539349 JVX91_RS02470 WP_205337872.1 531385..533526(-) (pilQ) [Pseudomonas sp. PDNC002]
ATGAACAGAGTACTTTCTCGCCTGAGCATTTCCCTGCTCGCGGCAGTCTTCGCGCCGGCCCTGTTGGCGGCCAATCTTCA
GAGTGTCGATGTGGCGGCGCTTCCGGGCGATCGCGTCGAATTGAAACTGGGCTTCGATGAGCCCATCGCCGCGCCGCGCG
GCTACACGATCGAGCAACCGGCGCGAATCGCGCTGGACCTGCCGGGCGTACAGAACAAGCTGGGCAGCAAGAATCGTGAA
CTGGGTGTGGGCAATGCCCGCAGCCTCACGGTGGTCGAGGCCAAGGACCGTACGCGCCTGATCGTGAACCTGACCACTCT
GGTTCCGTACAGCACCCGTTCGGACGGTTCGAACCTTTATATCGTGGTCGGTGGGGCGGGCTCCGCTGCCTCCGCCAACG
CGTCGGCGGCGCCGACCTCCTCCGCATCGGTCGCCAGGCCGGCTGCGCCCAAGCCTTACATTCCGGCCGGCAAGGCCATC
CGCAATGTTGATTTCCAGCGTGGCGAGCAGGGTGAAGGCAATGTCGTGATCGATCTTTCCGATCCGACCGTCAGCCCCGA
CATCCAGGAGCAGGGCGGCAAGATCCGTCTCGACTTCCCGCGGACCCAGCTGCCTGACAATCTCCGTGTCCGCCTGGACG
TGAAGGATTTCGCGACGCCGGTGCAGTTCGTCAACGCTTCGGCGGCGGGCGACAAGGCCAGCATCACCATCGAACCTACC
GGTCTGTACGATTACCTGGTCTATCAGACCGATAATCGCATGACTGTCAGCATCAAGCCGCTGACCCAGGACGATGCCGA
GAAGCGCAAGAAGGATAACTTCGCCTACACCGGCGAGAAGCTGTCGCTGAACTTCCAGGACATCGACGTGCGCTCGGTAC
TGCAGTTGATTGCAGACTTCACCGACCTGAACCTGGTGGCTTCCGACACCGTTCAGGGCAACATCACGCTTCGTCTGCAG
AATGTGCCGTGGGACCAGGCGCTGGACCTGGTGCTCAAGACCAAGGGTCTGGACAAGCGCAAGGTGGGCAACGTCCTGCT
GGTTGCTCCGGCTGACGAGATCGCGGCGCGTGAGCGCCAGGAGCTGGAGGCGCAGAAGCAGATTTCCGAACTGGCACCGC
TGCGTCGCGAGCTGATCCAGGTGAACTACGCCAAGGCCTCCGATATCGCCAAGCTGTTCCAGTCTGTCACTGGCGGCGCT
CCGGGTGCTCCGACGGGCGGTCAGGGCGATGTCCGCGGCTCGATTACCGTGGATGATCGGACTAACAGCATCATCGCCTA
CCAGACTCAGGATCGCCTGGACGAGCTGCGTCGTATCGTTTCTCAGCTGGATATCCCGGTTCGCCAGGTAATGATCGAGG
CACGTATCGTCGAAGCCTCCGTCGACTACAGCAAGAGCCTGGGCGTTCGTTGGGGCGGTGCCTTCACCTTCGGTAACTGG
GCCGCTTGGGGTAAAGACGGCAACATCGGCACTGGCGGCTCCAACGGTACCAGTTGCGGCCCGTTCGGCGGTGGCGGATG
TACGCTACCGACGACCAGCAACTCCCCGACCCCGTCGGTTGACCTGGGTGCTACCAACGCCACTTCCGGCATCGGCATCG
GCTTCGTGTCCAACAACGCGATCCTCGACCTGCAGCTCTCTGCGATGGAGAAAGGCGGCAACGGCGAAGTGGTCTCCCAG
CCGAAGGTCGTCACCTCCGACAAGGAAACCGCGAAGATCCTGAAGGGTTCGGAAATTCCCTACCAGGAAGCCAGCTCCAG
CGGCGCGACCTCGGTATCCTTCAAGGAAGCTGCGCTGTCCCTGGAAGTGACCCCGCAGATCACTCCGGACAACCGCATCA
TCATGGAAGTGAAGGTCAACAAGGATGAGCCGGACTACGCCAACGCCCTGAACGGCGTGCCGCCGATCAAGAAGAACGAG
GTGAACGCCAAGGTGCTGGTCAACGATGGCGAAACCATCGTGATTGGTGGCGTGTTCTCCAACACCCAGACCAAGGCGAC
CGACAAGGTTCCGTTCCTGGGAGACGTTCCGGTGCTGGGCCGACTGTTCCGTCGTGATTCGGTAACCGACAGCAAGAACG
AGCTGCTGGTTTTCCTTACCCCGCGGATCATGAATAATCAGGCCATTGCAGTCGGCCGTTGA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (548-704)

• AMIN domain (AMIN) (41-121)

• Bacterial type II/III secretion system short domain (Secretin_N) (378-449)

• Secretin and TonB N terminus short domain (STN) (304-350)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilQ	Pseudomonas aeruginosa PAK	81.692	100	0.826
comQ	Acinetobacter baylyi ADP1	41.667	100	0.428
pilQ	Acinetobacter baumannii strain A118	39.785	100	0.415
pilQ	Acinetobacter baumannii D1279779	39.785	100	0.415
pilQ	Legionella pneumophila strain ERS1305867	39.504	96.213	0.38
pilQ	Legionella pneumophila strain Lp02	39.359	96.213	0.379