Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   JVX91_RS02490 Genome accession   NZ_CP070356
Coordinates   535338..536402 (-) Length   354 a.a.
NCBI ID   WP_205337876.1    Uniprot ID   -
Organism   Pseudomonas sp. PDNC002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 534101..543383 535338..536402 within 0


Gene organization within MGE regions


Location: 534101..543383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX91_RS02480 (JVX91_02480) pilO 534101..534745 (-) 645 WP_205337874.1 type 4a pilus biogenesis protein PilO -
  JVX91_RS02485 (JVX91_02485) pilN 534742..535338 (-) 597 WP_205337875.1 type 4a pilus biogenesis protein PilN -
  JVX91_RS02490 (JVX91_02490) pilM 535338..536402 (-) 1065 WP_205337876.1 pilus assembly protein PilM Machinery gene
  JVX91_RS02495 (JVX91_02495) - 536588..539029 (+) 2442 WP_205337877.1 penicillin-binding protein 1A -
  JVX91_RS02500 (JVX91_02500) - 539218..539685 (+) 468 WP_205337878.1 hypothetical protein -
  JVX91_RS02505 (JVX91_02505) - 539679..540173 (-) 495 WP_081515415.1 M48 family metallopeptidase -
  JVX91_RS02510 (JVX91_02510) - 540223..540993 (-) 771 WP_205337879.1 class I SAM-dependent methyltransferase -
  JVX91_RS02515 (JVX91_02515) - 541031..541444 (-) 414 WP_205337880.1 hypothetical protein -
  JVX91_RS02520 (JVX91_02520) fba 541539..542603 (-) 1065 WP_024764154.1 class II fructose-bisphosphate aldolase -
  JVX91_RS02525 (JVX91_02525) - 542708..543046 (-) 339 WP_205337881.1 MliC family protein -
  JVX91_RS02530 (JVX91_02530) - 543189..543383 (-) 195 WP_205337882.1 hypothetical protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37770.09 Da        Isoelectric Point: 4.4816

>NTDB_id=539350 JVX91_RS02490 WP_205337876.1 535338..536402(-) (pilM) [Pseudomonas sp. PDNC002]
MLGLFNKKANTLLGIDISSTSVKLLELSRSGGRYKVEAYAVEPLPPNAVVEKNIAELEGVGQALSRVVAKARTPVKTAAV
AVAGSAVITKTIEMDGGLSDDELENQLKIEADQYIPYPLEEVAIDFEVQGTSARNADRVDVLLAACRKENVEVREAALAL
AGLTAKVVDVEAYALERAFSLLGQQLGGNADELTVAVVDIGATMTTLSVLHHGRTIYTREQLFGGRQLTEEIQRRYGLSV
EEAGLAKKQGGLPDDYDSEVLQPFKDAVVQQVSRSLQFFFAAGQFNDVDYILLAGGTASIPDLDRLIQQKIGTPTLVANP
FADMVLSGKVNAGALASDAPALMIACGLAMRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=539350 JVX91_RS02490 WP_205337876.1 535338..536402(-) (pilM) [Pseudomonas sp. PDNC002]
GTGCTAGGGCTCTTCAATAAGAAAGCGAACACGCTGCTGGGGATAGACATCAGTTCGACTTCGGTCAAACTTCTCGAATT
GAGCCGCTCTGGAGGCCGCTACAAGGTAGAGGCCTACGCTGTCGAGCCGCTCCCGCCCAATGCAGTGGTAGAAAAGAACA
TCGCTGAGCTGGAGGGTGTCGGCCAGGCGTTGTCACGCGTGGTCGCCAAGGCGCGGACCCCCGTGAAAACGGCTGCGGTC
GCAGTTGCCGGCTCGGCGGTCATCACCAAAACCATCGAGATGGACGGCGGCCTCTCGGACGACGAGCTGGAAAATCAGCT
CAAGATCGAAGCCGACCAGTACATCCCCTATCCGCTGGAAGAAGTCGCGATCGACTTCGAAGTCCAGGGTACTTCTGCTC
GCAACGCAGACCGCGTTGACGTACTCCTTGCTGCTTGTCGGAAGGAGAACGTCGAGGTTCGCGAGGCGGCACTGGCGCTT
GCGGGGCTTACGGCGAAGGTCGTCGACGTTGAGGCCTACGCGCTGGAAAGAGCGTTTAGTCTGCTCGGACAGCAGTTGGG
TGGCAATGCCGACGAGCTCACAGTTGCAGTAGTCGACATCGGCGCCACGATGACGACGCTGAGCGTCCTGCACCACGGTC
GCACCATCTACACCCGTGAGCAGTTGTTCGGCGGCCGCCAACTCACCGAGGAAATCCAGCGTCGCTACGGCCTGTCGGTC
GAGGAAGCCGGACTCGCCAAGAAGCAGGGCGGGCTGCCGGACGACTACGACAGCGAGGTGCTGCAGCCGTTCAAGGACGC
CGTAGTCCAGCAAGTGTCGCGCTCCCTCCAGTTCTTCTTCGCAGCCGGTCAGTTCAACGATGTGGACTACATCCTGCTGG
CGGGCGGCACCGCGTCGATTCCTGACCTCGATCGCCTGATCCAGCAGAAGATCGGTACTCCGACGCTGGTCGCGAACCCC
TTCGCCGATATGGTGCTGAGTGGGAAGGTCAATGCCGGCGCGCTGGCAAGTGACGCGCCCGCGCTGATGATTGCCTGCGG
TCTGGCGATGAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

57.345

100

0.573
  comM Acinetobacter nosocomialis M2

57.345

100

0.573
  comM Acinetobacter baylyi ADP1

53.39

100

0.534
  pilM Legionella pneumophila strain ERS1305867

46.893

100

0.469