NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	JVX94_RS17720	Genome accession	NZ_CP070345
Coordinates	3486877..3487473 (-)	Length	198 a.a.
NCBI ID	WP_007500118.1	Uniprot ID	-
Organism	Bacillus sp. PDNC022
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3481877..3492473

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JVX94_RS17695 (JVX94_17695)	-	3481961..3482938 (-)	978	WP_111292206.1	D-glycerate dehydrogenase	-
JVX94_RS17700 (JVX94_17700)	-	3483492..3484073 (+)	582	WP_095409623.1	carbonic anhydrase	-
JVX94_RS17705 (JVX94_17705)	-	3484112..3485734 (+)	1623	WP_075611966.1	SulP family inorganic anion transporter	-
JVX94_RS17710 (JVX94_17710)	-	3485761..3486102 (-)	342	WP_203128873.1	MazG-like family protein	-
JVX94_RS17715 (JVX94_17715)	-	3486240..3486818 (+)	579	WP_095409621.1	TIGR00730 family Rossman fold protein	-
JVX94_RS17720 (JVX94_17720)	clpP	3486877..3487473 (-)	597	WP_007500118.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
JVX94_RS19630	-	3488379..3488555 (+)	177	WP_223251027.1	hypothetical protein	-
JVX94_RS19635	-	3488551..3488718 (+)	168	WP_240193845.1	hypothetical protein	-
JVX94_RS17735 (JVX94_17735)	-	3489057..3489866 (+)	810	WP_095409620.1	DUF6270 domain-containing protein	-
JVX94_RS17745 (JVX94_17745)	-	3490555..3491721 (+)	1167	WP_144483594.1	macrolide family glycosyltransferase	-
JVX94_RS17750 (JVX94_17750)	-	3491894..3492049 (-)	156	WP_205183975.1	hypothetical protein	-

Sequence

Protein

Download Length: 198 a.a. Molecular weight: 21846.03 Da Isoelectric Point: 4.6905

                                >NTDB_id=539317 JVX94_RS17720 WP_007500118.1 3486877..3487473(-) (clpP) [Bacillus sp. PDNC022]

MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT

MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ

PIEVIERDTDRDNFKTAEEALQYGLIDKVLTRNTEEQK

Nucleotide

Download Length: 597 bp

                                >NTDB_id=539317 JVX94_RS17720 WP_007500118.1 3486877..3487473(-) (clpP) [Bacillus sp. PDNC022]

ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA

CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTGTCACAGCTGCTTTTCTTAGAAGCTG

AAGATCCAGAAAAAGATATTTCTATCTACATTAACAGCCCTGGCGGTTCAATCACAGCTGGTATGGCCATTTACGATACG

ATGCAATTTATTAAACCAAAGGTATCAACTATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG

TGAAAAAGGTAAGCGTTATGCTCTTCCAAACAGTGAAGTCATGATTCACCAACCACTCGGCGGTGCCCAAGGTCAAGCAA

CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGCGATAAACTGAACCAAGTACTTGCTGAACGTACTGGTCAG

CCAATTGAAGTCATTGAGCGCGATACAGATCGTGACAACTTCAAAACAGCGGAAGAAGCACTTCAATACGGACTCATTGA

CAAAGTCTTGACCCGTAATACAGAAGAACAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	93.434	100	0.934
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	67.539	96.465	0.652
clpP	Streptococcus thermophilus LMG 18311	58.549	97.475	0.571
clpP	Streptococcus thermophilus LMD-9	58.549	97.475	0.571
clpP	Lactococcus lactis subsp. cremoris KW2	56.186	97.98	0.551
clpP	Streptococcus pneumoniae Rx1	55.67	97.98	0.545
clpP	Streptococcus pneumoniae D39	55.67	97.98	0.545
clpP	Streptococcus pneumoniae R6	55.67	97.98	0.545
clpP	Streptococcus pneumoniae TIGR4	55.67	97.98	0.545
clpP	Streptococcus pyogenes JRS4	55.44	97.475	0.54
clpP	Streptococcus pyogenes MGAS315	55.44	97.475	0.54
clpP	Streptococcus mutans UA159	54.639	97.98	0.535
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	54.124	97.98	0.53

Detailed information NTG0539317