Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | JK088_RS13065 | Genome accession | NZ_CP085857 |
| Coordinates | 2740743..2741183 (+) | Length | 146 a.a. |
| NCBI ID | WP_017447682.1 | Uniprot ID | A0ABX1HXP0 |
| Organism | Vibrio parahaemolyticus strain LH214 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2735743..2746183
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JK088_RS13050 (JK088_13060) | pdhR | 2737776..2738543 (-) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| JK088_RS13055 (JK088_13065) | ampD | 2738949..2739500 (-) | 552 | WP_005484832.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| JK088_RS13060 (JK088_13070) | nadC | 2739593..2740480 (+) | 888 | WP_017447683.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| JK088_RS13065 (JK088_13075) | pilA | 2740743..2741183 (+) | 441 | WP_017447682.1 | pilin | Machinery gene |
| JK088_RS13070 (JK088_13080) | pilB | 2741180..2742865 (+) | 1686 | WP_017447681.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| JK088_RS13075 (JK088_13085) | pilC | 2742890..2744113 (+) | 1224 | WP_005479682.1 | type II secretion system F family protein | Machinery gene |
| JK088_RS13080 (JK088_13090) | pilD | 2744178..2745047 (+) | 870 | WP_017447680.1 | prepilin peptidase | Machinery gene |
| JK088_RS13085 (JK088_13095) | coaE | 2745048..2745662 (+) | 615 | WP_017447679.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 15461.66 Da Isoelectric Point: 9.8454
>NTDB_id=539088 JK088_RS13065 WP_017447682.1 2740743..2741183(+) (pilA) [Vibrio parahaemolyticus strain LH214]
MKNSKQKKQQGFTLIELMIVVAIIGVLAAVAIPAYQNYVQKTEVASASATVRGLLTNIDMYQQENGGTFPTDAKLVGGTQ
KMNALGTITLATATSGGTATFVFDEGSLKGKTASVQYAKNNKTGWTCATKNVPEDSRPNSCTATYK
MKNSKQKKQQGFTLIELMIVVAIIGVLAAVAIPAYQNYVQKTEVASASATVRGLLTNIDMYQQENGGTFPTDAKLVGGTQ
KMNALGTITLATATSGGTATFVFDEGSLKGKTASVQYAKNNKTGWTCATKNVPEDSRPNSCTATYK
Nucleotide
Download Length: 441 bp
>NTDB_id=539088 JK088_RS13065 WP_017447682.1 2740743..2741183(+) (pilA) [Vibrio parahaemolyticus strain LH214]
ATGAAAAACAGTAAACAGAAAAAACAACAGGGTTTTACTCTGATTGAATTGATGATTGTGGTGGCGATTATTGGTGTTTT
AGCAGCAGTCGCAATACCTGCATATCAAAACTATGTCCAAAAGACAGAAGTAGCTTCAGCTTCTGCCACTGTTCGCGGAT
TACTTACAAATATCGATATGTATCAACAAGAAAATGGTGGTACTTTTCCCACTGATGCGAAATTAGTTGGCGGGACTCAA
AAAATGAATGCCCTAGGAACTATAACCTTAGCTACAGCTACTAGTGGCGGTACTGCTACATTTGTATTCGATGAAGGTAG
CTTGAAAGGTAAAACAGCTTCTGTTCAATATGCCAAAAACAACAAAACAGGTTGGACTTGCGCGACTAAAAATGTGCCAG
AAGATTCTCGTCCAAATAGTTGTACAGCAACATATAAATGA
ATGAAAAACAGTAAACAGAAAAAACAACAGGGTTTTACTCTGATTGAATTGATGATTGTGGTGGCGATTATTGGTGTTTT
AGCAGCAGTCGCAATACCTGCATATCAAAACTATGTCCAAAAGACAGAAGTAGCTTCAGCTTCTGCCACTGTTCGCGGAT
TACTTACAAATATCGATATGTATCAACAAGAAAATGGTGGTACTTTTCCCACTGATGCGAAATTAGTTGGCGGGACTCAA
AAAATGAATGCCCTAGGAACTATAACCTTAGCTACAGCTACTAGTGGCGGTACTGCTACATTTGTATTCGATGAAGGTAG
CTTGAAAGGTAAAACAGCTTCTGTTCAATATGCCAAAAACAACAAAACAGGTTGGACTTGCGCGACTAAAAATGTGCCAG
AAGATTCTCGTCCAAATAGTTGTACAGCAACATATAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
52.344 |
87.671 |
0.459 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
42.763 |
100 |
0.445 |
| pilA | Vibrio cholerae strain A1552 |
42.763 |
100 |
0.445 |
| pilA | Vibrio cholerae C6706 |
42.763 |
100 |
0.445 |
| pilA | Pseudomonas aeruginosa PAK |
40.94 |
100 |
0.418 |
| pilA/pilA1 | Eikenella corrodens VA1 |
38.562 |
100 |
0.404 |
| pilA | Acinetobacter baumannii strain A118 |
39.13 |
94.521 |
0.37 |