Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   JR441_RS18090 Genome accession   NZ_CP069789
Coordinates   3520224..3520913 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain BIM B-569G     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3515224..3525913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR441_RS18055 (JR441_18055) flgN 3515405..3515887 (-) 483 WP_014481048.1 flagellar protein FlgN -
  JR441_RS18060 (JR441_18060) flgM 3515903..3516169 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  JR441_RS18065 (JR441_18065) yvyF 3516250..3516669 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  JR441_RS18070 (JR441_18070) comFC 3516742..3517464 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  JR441_RS18075 (JR441_18075) comFB 3517428..3517724 (-) 297 WP_015483764.1 late competence protein ComFB -
  JR441_RS18080 (JR441_18080) comFA 3517784..3519175 (-) 1392 WP_198878462.1 ATP-dependent helicase ComFA Machinery gene
  JR441_RS18085 (JR441_18085) fakBA 3519281..3520126 (-) 846 WP_003244125.1 DegV family protein -
  JR441_RS18090 (JR441_18090) degU 3520224..3520913 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JR441_RS18095 (JR441_18095) degS 3520996..3522153 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  JR441_RS18100 (JR441_18100) yvyE 3522370..3523023 (+) 654 WP_003227979.1 YigZ family protein -
  JR441_RS18105 (JR441_18105) tagV 3523023..3524198 (+) 1176 WP_064671519.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  JR441_RS18110 (JR441_18110) tagO 3524271..3525347 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=536642 JR441_RS18090 WP_003219701.1 3520224..3520913(-) (degU) [Bacillus subtilis strain BIM B-569G]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=536642 JR441_RS18090 WP_003219701.1 3520224..3520913(-) (degU) [Bacillus subtilis strain BIM B-569G]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1