Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ICR96_RS21975 Genome accession   NZ_CP069606
Coordinates   4260888..4262129 (-) Length   413 a.a.
NCBI ID   WP_034649269.1    Uniprot ID   -
Organism   Priestia megaterium strain CDC 2008724142     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 4255888..4267129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICR96_RS21955 (ICR96_21950) spoVS 4256448..4256708 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  ICR96_RS21960 (ICR96_21955) - 4256932..4257729 (-) 798 WP_028410858.1 TIGR00282 family metallophosphoesterase -
  ICR96_RS21965 (ICR96_21960) rny 4257811..4259370 (-) 1560 WP_013058803.1 ribonuclease Y -
  ICR96_RS21970 (ICR96_21965) recA 4259651..4260688 (-) 1038 WP_013058804.1 recombinase RecA Machinery gene
  ICR96_RS21975 (ICR96_21970) cinA 4260888..4262129 (-) 1242 WP_034649269.1 competence/damage-inducible protein A Machinery gene
  ICR96_RS21980 (ICR96_21975) pgsA 4262146..4262730 (-) 585 WP_034649266.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ICR96_RS21985 (ICR96_21980) - 4262875..4263858 (-) 984 WP_228459493.1 RodZ domain-containing protein -
  ICR96_RS21990 (ICR96_21985) - 4263871..4264662 (-) 792 WP_034649265.1 DUF3388 domain-containing protein -
  ICR96_RS21995 (ICR96_21990) - 4264876..4265136 (-) 261 WP_013058809.1 DUF3243 domain-containing protein -
  ICR96_RS22000 (ICR96_21995) - 4265202..4265927 (-) 726 WP_013084748.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44886.03 Da        Isoelectric Point: 4.9139

>NTDB_id=536128 ICR96_RS21975 WP_034649269.1 4260888..4262129(-) (cinA) [Priestia megaterium strain CDC 2008724142]
MMNAEIIGVGSELLLGQIANTNAQYLSKKLAELGINVYYHTVVGDNAQRLKEVIATAQTRAELIIFTGGLGPTKDDLTKE
TIASVLGVELTTNAEALESIEAYFKQSNRIMTPNNKKQAIVLEGSAVLPNDYGMAPGMGLTVEGKHYMLFPGPPKELYPM
YESYGQEFLAQKLELKESIESRVLRFFGIGESQLETEIEDLLDAQTNPTIAPLAGDGEVTLRLTAKHADAAEAQRMLDEM
EKTISERVGEYLYGYEATSLHNELVKELTAQGLTIASAESLTGGLFSERLTSVSGAGEAVKGSLVAYHYEIKQNILGVSE
HTLNQYGAVSEQCAAEMAQRIQQLCKTDIGIGFTGVAGPSKQEGHPVGTVYIGVAYKDQAPQVYSLQLSGSRQGIRSRTV
NYGCHYVLKMIKK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=536128 ICR96_RS21975 WP_034649269.1 4260888..4262129(-) (cinA) [Priestia megaterium strain CDC 2008724142]
ATGATGAACGCTGAAATTATTGGAGTCGGCTCTGAGCTGCTGCTTGGACAAATTGCCAATACAAACGCTCAGTATTTATC
GAAAAAATTAGCCGAACTTGGAATTAATGTTTACTATCATACGGTAGTAGGAGATAATGCACAGCGCTTAAAAGAAGTGA
TTGCTACAGCTCAAACGCGTGCAGAGTTAATTATTTTCACAGGCGGGCTTGGTCCTACAAAAGATGACTTAACAAAAGAA
ACAATTGCGAGTGTGCTAGGAGTAGAGCTGACAACAAATGCAGAAGCACTTGAAAGCATTGAAGCCTATTTCAAACAGTC
AAATCGTATCATGACACCTAACAATAAAAAACAGGCAATTGTGCTAGAAGGTTCGGCAGTGCTCCCTAACGATTACGGAA
TGGCTCCAGGTATGGGGCTTACGGTAGAGGGAAAACACTATATGTTATTCCCCGGGCCTCCAAAAGAGCTTTATCCAATG
TATGAATCGTATGGTCAAGAATTTTTAGCTCAAAAGCTTGAATTAAAAGAAAGTATTGAATCACGCGTTCTTCGCTTTTT
CGGAATAGGGGAATCACAGCTTGAGACGGAAATTGAAGATTTGCTTGATGCGCAAACCAACCCGACGATCGCGCCGCTAG
CAGGAGATGGAGAAGTGACGCTTCGCTTAACTGCTAAGCACGCTGATGCTGCTGAAGCACAGCGCATGTTAGACGAAATG
GAAAAAACCATTTCAGAGCGCGTAGGCGAGTATTTATATGGATACGAAGCAACTTCTTTACATAATGAATTGGTAAAAGA
ATTAACGGCACAAGGATTAACGATTGCTTCAGCCGAAAGTTTAACCGGCGGTTTATTCAGCGAACGTTTAACATCTGTTT
CAGGTGCTGGAGAAGCTGTAAAAGGCAGCCTGGTCGCCTATCATTATGAAATCAAGCAAAATATTCTCGGAGTGAGCGAA
CACACGCTGAATCAGTACGGAGCCGTTAGCGAGCAGTGCGCGGCTGAAATGGCTCAGCGTATTCAACAGTTATGCAAAAC
GGATATTGGCATCGGATTTACAGGTGTAGCTGGACCCTCCAAACAAGAAGGACATCCTGTAGGAACAGTATATATAGGGG
TAGCCTATAAAGATCAAGCTCCTCAAGTTTACAGCCTGCAGCTATCTGGAAGCCGCCAGGGGATTCGTTCACGAACGGTT
AATTATGGCTGTCATTACGTATTAAAGATGATAAAGAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.512

99.274

0.591
  cinA Streptococcus mitis NCTC 12261

46.905

100

0.477
  cinA Streptococcus pneumoniae TIGR4

46.19

100

0.47
  cinA Streptococcus mitis SK321

46.19

100

0.47
  cinA Streptococcus pneumoniae Rx1

45.714

100

0.465
  cinA Streptococcus pneumoniae R6

45.714

100

0.465
  cinA Streptococcus pneumoniae D39

45.476

100

0.462
  cinA Streptococcus mutans UA159

44.634

99.274

0.443