Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   I6J46_RS05490 Genome accession   NZ_CP069586
Coordinates   1158798..1159931 (-) Length   377 a.a.
NCBI ID   WP_204085733.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS_1216     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1153798..1164931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J46_RS05465 (I6J46_05465) - 1153970..1154734 (-) 765 WP_204085732.1 AraC family transcriptional regulator -
  I6J46_RS05470 (I6J46_05470) nepI 1154756..1155970 (-) 1215 WP_039766335.1 MFS transporter -
  I6J46_RS05475 (I6J46_05475) - 1156106..1156759 (+) 654 WP_080631244.1 TetR/AcrR family transcriptional regulator -
  I6J46_RS05480 (I6J46_05480) - 1156864..1157784 (+) 921 WP_002114137.1 DMT family transporter -
  I6J46_RS05485 (I6J46_05485) yrdC 1158177..1158746 (-) 570 WP_068612792.1 L-threonylcarbamoyladenylate synthase -
  I6J46_RS05490 (I6J46_05490) dprA 1158798..1159931 (-) 1134 WP_204085733.1 DNA-processing protein DprA Machinery gene
  I6J46_RS05495 (I6J46_05495) tsaP 1159952..1161106 (-) 1155 WP_204085734.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  I6J46_RS05500 (I6J46_05500) def 1161229..1161759 (+) 531 WP_002114101.1 peptide deformylase -
  I6J46_RS05505 (I6J46_05505) - 1161803..1162228 (+) 426 WP_204085735.1 DUF2946 family protein -
  I6J46_RS05510 (I6J46_05510) oprC 1162301..1164415 (+) 2115 WP_204085736.1 TonB-dependent copper receptor -
  I6J46_RS05515 (I6J46_05515) - 1164469..1164675 (+) 207 WP_005072046.1 hypothetical protein -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41932.53 Da        Isoelectric Point: 6.6297

>NTDB_id=535774 I6J46_RS05490 WP_204085733.1 1158798..1159931(-) (dprA) [Acinetobacter pittii strain FDAARGOS_1216]
MLTQLSPHHYHTLKVWYLVQHSLVSFKKIVDYFGSCEKAVQPAGLSQWRNLGLHANHLKRVDEFQTAQGQAQFEKLTEQI
QQYTDFILTADDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYVSSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDSTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQRHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQQNFTEEAVVSSTPEI
PEHLINLYQSLDWVGQNIDQLVLHHSQPVAELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=535774 I6J46_RS05490 WP_204085733.1 1158798..1159931(-) (dprA) [Acinetobacter pittii strain FDAARGOS_1216]
ATGCTTACTCAACTTTCTCCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTGCAACACTCTTTAGTCAGCTTTAA
AAAAATTGTCGATTATTTTGGTAGCTGTGAAAAGGCGGTCCAACCTGCTGGATTATCTCAATGGCGCAATCTCGGGTTAC
ATGCTAATCATTTAAAACGCGTAGATGAATTTCAAACTGCTCAGGGTCAAGCTCAGTTTGAAAAACTAACTGAGCAGATC
CAGCAATATACCGACTTTATTTTAACGGCAGATGACTCAGGCTATCCCACTCAGTTATTACCTTATACAGATCACCCACC
TATCATTTTTGGAAAAGGCCAAGCTCAAGCTTTGTTGCAACCACAAATTGCGATTGTAGGTAGCCGAAAACCAAGCCCAC
ATGGTCGTCAGGTTGCTTATGATTTTGCCTATTACTTAAGTGAAAAAGGTTTTTATGTGAGTAGTGGCTTGGCATATGGG
ATTGATGAAGCTGCTCACCAAGGAGCATCAGCACATCAACGTACAATTGCAGTAACAGGAACCGGTTTAGACAGTACCTA
CCCTGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAATGGCGCGATTATTACTGAATTTTTGCCTGGAACAC
CCCCATTACAACGGCATTTCCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTGTTAGTGGTAGAAGCTACC
TTAAAAAGTGGTTCTCTCATCACTGCGAACAAAGCTGCCGAACAAGGTAAGACTGTATTTGCCATTCCTGGTCATATTTA
CAGTGAGTTTCATCAAGGTTGCCATCAACTTATTCGTGAGGGAGCAATTTTAGTCGATCATCCTGAACAAATTATTGAAG
ACCTTGCTTTACCCACTCAGTGGCAAAGTCAGCAACAAAACTTCACCGAGGAGGCTGTAGTTTCTAGTACCCCAGAAATT
CCTGAGCATTTAATTAACCTTTATCAATCTTTAGACTGGGTCGGACAAAATATTGATCAGCTTGTCTTACATCACTCTCA
GCCTGTTGCAGAACTCACCTCTTCACTGATGGAACTAGAACTACTTGGTTTATGTATGCAACAATCAGGATTGTATTTAC
GTTGTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

90.716

100

0.907

  dprA Acinetobacter baumannii strain A118

90.186

100

0.902

  dprA Acinetobacter baylyi ADP1

70.341

100

0.711

  dprA Vibrio cholerae strain A1552

43.844

88.329

0.387