Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   I6J34_RS12960 Genome accession   NZ_CP069582
Coordinates   2584207..2584533 (+) Length   108 a.a.
NCBI ID   WP_015900413.1    Uniprot ID   -
Organism   Staphylococcus carnosus strain FDAARGOS_1204     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2579207..2589533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J34_RS12940 (I6J34_12940) - 2580507..2581199 (-) 693 WP_115359461.1 hypothetical protein -
  I6J34_RS12945 (I6J34_12945) - 2581183..2582361 (-) 1179 WP_115359462.1 tyrosine-type recombinase/integrase -
  I6J34_RS12950 (I6J34_12950) - 2582593..2583143 (+) 551 Protein_2513 ATPase, T2SS/T4P/T4SS family -
  I6J34_RS12955 (I6J34_12955) comGB 2583524..2584189 (+) 666 WP_052719424.1 type II secretion system F family protein Machinery gene
  I6J34_RS12960 (I6J34_12960) comGC 2584207..2584533 (+) 327 WP_015900413.1 competence type IV pilus major pilin ComGC Machinery gene
  I6J34_RS12965 (I6J34_12965) - 2584553..2584966 (+) 414 WP_231635362.1 prepilin-type cleavage/methylation domain-containing protein -
  I6J34_RS12970 (I6J34_12970) - 2584947..2585243 (+) 297 WP_046099277.1 hypothetical protein -
  I6J34_RS12975 (I6J34_12975) - 2585269..2585517 (+) 249 WP_235318552.1 hypothetical protein -
  I6J34_RS13640 (I6J34_12980) - 2585540..2585659 (+) 120 WP_414075505.1 hypothetical protein -
  I6J34_RS12985 (I6J34_12985) - 2585830..2586369 (+) 540 WP_046099279.1 shikimate kinase -
  I6J34_RS12990 (I6J34_12990) gcvT 2586560..2587654 (+) 1095 WP_046099280.1 glycine cleavage system aminomethyltransferase GcvT -
  I6J34_RS12995 (I6J34_12995) gcvPA 2587675..2589021 (+) 1347 WP_046099281.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12186.36 Da        Isoelectric Point: 9.8933

>NTDB_id=535727 I6J34_RS12960 WP_015900413.1 2584207..2584533(+) (comGC) [Staphylococcus carnosus strain FDAARGOS_1204]
MKRYYFKLKNKNLKAFTLLEMLLVLLVISVLLILIIPNIAKQSEHVQATGCEAQQKMVNSQIEAYSLKNNRKPDSIDELV
TQGYLKEAQKKCKSGESITIKNGEASIS

Nucleotide


Download         Length: 327 bp        

>NTDB_id=535727 I6J34_RS12960 WP_015900413.1 2584207..2584533(+) (comGC) [Staphylococcus carnosus strain FDAARGOS_1204]
ATGAAAAGATATTACTTTAAATTGAAAAATAAAAACTTAAAAGCTTTTACATTGTTAGAAATGCTGCTTGTATTATTGGT
TATTAGTGTATTATTAATTTTAATTATACCGAATATCGCTAAACAATCTGAACATGTCCAGGCTACAGGTTGTGAGGCAC
AACAAAAAATGGTGAATAGTCAAATAGAAGCTTATTCACTTAAAAATAATAGAAAACCTGATAGTATTGATGAACTTGTT
ACACAAGGATATTTAAAAGAAGCTCAAAAGAAGTGTAAATCAGGAGAAAGTATAACAATAAAAAATGGTGAAGCATCAAT
TAGCTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

72.632

87.963

0.639
  comGC Staphylococcus aureus N315

72.632

87.963

0.639
  comGC/cglC Streptococcus mitis SK321

45.283

98.148

0.444
  comGC/cglC Streptococcus pneumoniae R6

44.34

98.148

0.435
  comGC/cglC Streptococcus pneumoniae D39

44.34

98.148

0.435
  comGC/cglC Streptococcus pneumoniae TIGR4

44.34

98.148

0.435
  comGC/cglC Streptococcus pneumoniae Rx1

44.34

98.148

0.435
  comGC/cglC Streptococcus mitis NCTC 12261

47.826

85.185

0.407
  comYC Streptococcus gordonii str. Challis substr. CH1

49.398

76.852

0.38
  comGC Bacillus subtilis subsp. subtilis str. 168

40.625

88.889

0.361