Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   I6J35_RS04960 Genome accession   NZ_CP069567
Coordinates   988360..988686 (+) Length   108 a.a.
NCBI ID   WP_047130996.1    Uniprot ID   A0A143P863
Organism   Staphylococcus condimenti strain FDAARGOS_1205     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 983360..993686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J35_RS04930 (I6J35_04930) - 984113..984313 (+) 201 WP_047130990.1 YqgQ family protein -
  I6J35_RS04935 (I6J35_04935) - 984313..985299 (+) 987 WP_047130991.1 ROK family glucokinase -
  I6J35_RS04940 (I6J35_04940) - 985299..985628 (+) 330 WP_047130992.1 MTH1187 family thiamine-binding protein -
  I6J35_RS04945 (I6J35_04945) - 985628..986251 (+) 624 WP_047130993.1 MBL fold metallo-hydrolase -
  I6J35_RS04950 (I6J35_04950) comGA 986323..987297 (+) 975 WP_047130994.1 competence type IV pilus ATPase ComGA Machinery gene
  I6J35_RS04955 (I6J35_04955) comGB 987269..988342 (+) 1074 WP_047130995.1 competence type IV pilus assembly protein ComGB -
  I6J35_RS04960 (I6J35_04960) comGC 988360..988686 (+) 327 WP_047130996.1 competence type IV pilus major pilin ComGC Machinery gene
  I6J35_RS04965 (I6J35_04965) - 988706..989119 (+) 414 WP_232011920.1 prepilin-type cleavage/methylation domain-containing protein -
  I6J35_RS04970 (I6J35_04970) - 989100..989393 (+) 294 WP_047130998.1 hypothetical protein -
  I6J35_RS04975 (I6J35_04975) comGF 989335..989811 (+) 477 WP_047130999.1 competence type IV pilus minor pilin ComGF -
  I6J35_RS04980 (I6J35_04980) - 989976..990515 (+) 540 WP_152650907.1 shikimate kinase -
  I6J35_RS04985 (I6J35_04985) gcvT 990707..991801 (+) 1095 WP_070704818.1 glycine cleavage system aminomethyltransferase GcvT -
  I6J35_RS04990 (I6J35_04990) gcvPA 991822..993168 (+) 1347 WP_047131001.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12114.29 Da        Isoelectric Point: 9.7598

>NTDB_id=535645 I6J35_RS04960 WP_047130996.1 988360..988686(+) (comGC) [Staphylococcus condimenti strain FDAARGOS_1205]
MKKYYLLFKNKNLKAFTLLEMLLVLLVISVLLILIIPNIAKQSEHVQSTGCEAQQKMVNSQIEAFTLKNNQKPNSIDELV
TQGYLKEGQKKCKSGESITIKNGEASIS

Nucleotide


Download         Length: 327 bp        

>NTDB_id=535645 I6J35_RS04960 WP_047130996.1 988360..988686(+) (comGC) [Staphylococcus condimenti strain FDAARGOS_1205]
ATGAAAAAATATTACTTATTATTTAAAAATAAAAACTTAAAAGCTTTTACATTGTTAGAAATGTTGCTCGTATTGTTGGT
TATCAGTGTATTATTAATTTTGATTATACCTAACATTGCTAAGCAATCTGAACATGTTCAATCTACAGGTTGTGAGGCAC
AGCAAAAAATGGTGAATAGTCAAATAGAAGCCTTTACACTTAAAAATAACCAAAAGCCCAATTCTATCGATGAACTTGTA
ACACAAGGTTATCTAAAGGAAGGGCAAAAGAAATGTAAATCTGGAGAAAGTATAACAATTAAAAATGGTGAAGCTTCAAT
TAGCTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A143P863

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

70.526

87.963

0.62
  comGC Staphylococcus aureus N315

70.526

87.963

0.62
  comGC/cglC Streptococcus mitis SK321

43.396

98.148

0.426
  comGC/cglC Streptococcus pneumoniae R6

42.453

98.148

0.417
  comGC/cglC Streptococcus pneumoniae D39

42.453

98.148

0.417
  comGC/cglC Streptococcus pneumoniae TIGR4

42.453

98.148

0.417
  comGC/cglC Streptococcus pneumoniae Rx1

42.453

98.148

0.417
  comGC/cglC Streptococcus mitis NCTC 12261

45.652

85.185

0.389
  comGC Bacillus subtilis subsp. subtilis str. 168

41.667

88.889

0.37