Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   I6K04_RS13550 Genome accession   NZ_CP069442
Coordinates   2885652..2886731 (+) Length   359 a.a.
NCBI ID   WP_081526080.1    Uniprot ID   -
Organism   Chromobacterium violaceum strain FDAARGOS_1274     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2880652..2891731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K04_RS13525 (I6K04_13525) rsmB 2880776..2882026 (-) 1251 WP_043618214.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  I6K04_RS13530 (I6K04_13530) htpX 2882093..2882947 (-) 855 WP_011137809.1 zinc metalloprotease HtpX -
  I6K04_RS13535 (I6K04_13535) fmt 2882990..2883913 (-) 924 WP_081526193.1 methionyl-tRNA formyltransferase -
  I6K04_RS13540 (I6K04_13540) def 2883988..2884491 (-) 504 WP_011137811.1 peptide deformylase -
  I6K04_RS13545 (I6K04_13545) - 2884618..2885655 (+) 1038 WP_081526079.1 LysM peptidoglycan-binding domain-containing protein -
  I6K04_RS13550 (I6K04_13550) dprA 2885652..2886731 (+) 1080 WP_081526080.1 DNA-processing protein DprA Machinery gene
  I6K04_RS13555 (I6K04_13555) - 2886761..2887219 (+) 459 WP_081526081.1 DUF494 family protein -
  I6K04_RS13560 (I6K04_13560) topA 2887370..2889679 (+) 2310 WP_043618220.1 type I DNA topoisomerase -
  I6K04_RS13565 (I6K04_13565) - 2889777..2891054 (-) 1278 WP_139795056.1 hypothetical protein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 37164.63 Da        Isoelectric Point: 6.2323

>NTDB_id=534736 I6K04_RS13550 WP_081526080.1 2885652..2886731(+) (dprA) [Chromobacterium violaceum strain FDAARGOS_1274]
MSGAPQAWLTLALTPGIGPVGFLKLIDAFGSAEAAAAARSAQTEKLVGREAAEALQAGAAAESVQAALAWAESDGCHLIT
LLDADYPAQLAEAASPPPLLFARGRRELLARTMLAVVGSRAATQQGKRNAEDFASALAAHGYTIVSGLASGIDAAAHQGA
LAHPASTVAVIGTGIDRVYPASNRQLAHRVAEHGLILSEFPLGMGPLPGHFPRRNRIIAGLARGCLVVEAGIASGSLISA
RLAMENNRDVMAIPGSIHNAQARGCHRLIKDGARLVENVDDVLDEIGRLPAAPPPILRQEEPEAPPLLNSMGWEPVLADA
LAGTLGLTPGEVYAMLLELELAGRVASLPGGRFQRLAQL

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=534736 I6K04_RS13550 WP_081526080.1 2885652..2886731(+) (dprA) [Chromobacterium violaceum strain FDAARGOS_1274]
ATGAGCGGCGCCCCGCAAGCCTGGCTGACGCTGGCGCTGACCCCCGGCATCGGCCCGGTCGGCTTCCTGAAGCTGATAGA
CGCGTTCGGCTCGGCCGAGGCCGCGGCCGCCGCCCGTTCCGCCCAGACCGAGAAGCTGGTGGGCCGCGAGGCGGCCGAAG
CGCTGCAGGCCGGCGCGGCGGCGGAATCGGTCCAGGCCGCGCTCGCCTGGGCCGAAAGCGACGGCTGCCACTTGATCACG
CTGCTCGACGCCGACTACCCGGCGCAGCTGGCCGAAGCCGCGTCGCCGCCGCCGCTGCTGTTCGCGCGCGGCCGGCGCGA
GCTGCTGGCGCGGACCATGCTGGCCGTGGTCGGCAGCCGGGCCGCCACCCAGCAGGGCAAGCGCAACGCCGAGGACTTCG
CGTCGGCGCTGGCCGCCCACGGCTACACCATCGTCAGCGGCCTGGCCAGCGGCATCGACGCCGCCGCCCACCAGGGCGCG
CTCGCGCATCCAGCCTCCACCGTCGCGGTGATCGGCACCGGCATCGACCGCGTCTACCCGGCGTCCAACCGCCAGCTCGC
CCACCGCGTCGCCGAGCACGGACTGATCCTGTCCGAGTTCCCGCTGGGCATGGGCCCGCTGCCCGGCCACTTCCCGCGCC
GCAACCGCATCATCGCCGGCCTGGCCCGCGGCTGCCTGGTGGTGGAGGCCGGCATCGCGTCCGGCTCGCTGATCAGCGCG
CGGCTGGCGATGGAGAACAACCGCGACGTGATGGCGATACCGGGCAGCATCCACAACGCCCAGGCGCGCGGCTGCCACCG
GCTGATCAAGGATGGCGCGCGGCTGGTGGAGAACGTCGACGACGTGCTGGACGAGATCGGCCGGCTGCCGGCGGCGCCGC
CGCCCATCCTCCGGCAAGAAGAGCCGGAAGCGCCGCCGCTGTTGAACAGCATGGGTTGGGAGCCGGTGCTGGCGGACGCG
CTGGCCGGGACGCTCGGGTTGACTCCCGGGGAGGTTTACGCGATGCTGCTCGAACTGGAACTGGCCGGCCGCGTGGCCAG
CCTGCCGGGCGGCCGCTTCCAGCGGCTCGCACAACTCTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-277)

DprA winged helix domain (DprA_WH)

(291-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis MC58

46.41

100

0.504
  dprA Neisseria meningitidis strain C311

46.41

100

0.504
  dprA Neisseria gonorrhoeae strain FA1090

46.649

100

0.504
  dprA Neisseria gonorrhoeae MS11

46.134

100

0.499
  dprA Vibrio campbellii strain DS40M4

41.828

100

0.421
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.276

100

0.393
  dprA Legionella pneumophila strain ERS1305867

45.973

83.008

0.382
  dprA Vibrio cholerae strain A1552

36.712

100

0.373
  dprA Acinetobacter baylyi ADP1

36.111

100

0.362