Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB/cglB   Type   Machinery gene
Locus tag   JQM34_RS06020 Genome accession   NZ_CP069427
Coordinates   1276524..1277540 (-) Length   338 a.a.
NCBI ID   WP_000355379.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1271524..1282540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQM34_RS05980 (JQM34_0001219) - 1271846..1273036 (-) 1191 WP_049490206.1 acetate kinase -
  JQM34_RS05985 (JQM34_0001220) comYH 1273087..1274040 (-) 954 WP_049490205.1 class I SAM-dependent methyltransferase Machinery gene
  JQM34_RS05990 (JQM34_0001221) - 1274099..1274689 (-) 591 WP_049490204.1 class I SAM-dependent methyltransferase -
  JQM34_RS05995 (JQM34_0001222) comGG/cglG 1274722..1275135 (-) 414 WP_070568123.1 competence type IV pilus minor pilin ComGG Machinery gene
  JQM34_RS06000 (JQM34_0001223) comGF/cglF 1275113..1275574 (-) 462 WP_070568120.1 competence type IV pilus minor pilin ComGF Machinery gene
  JQM34_RS06005 (JQM34_0001224) comGE/cglE 1275537..1275839 (-) 303 WP_200370534.1 competence type IV pilus minor pilin ComGE Machinery gene
  JQM34_RS06010 (JQM34_0001225) comGD/cglD 1275802..1276236 (-) 435 WP_200370535.1 competence type IV pilus minor pilin ComGD Machinery gene
  JQM34_RS06015 (JQM34_0001226) comGC/cglC 1276199..1276522 (-) 324 WP_200370536.1 competence type IV pilus major pilin ComGC Machinery gene
  JQM34_RS06020 (JQM34_0001227) comGB/cglB 1276524..1277540 (-) 1017 WP_000355379.1 competence type IV pilus assembly protein ComGB Machinery gene
  JQM34_RS06025 comGA 1277488..1278428 (-) 941 Protein_1185 competence type IV pilus ATPase ComGA -
  JQM34_RS06030 (JQM34_0001230) - 1278498..1278863 (-) 366 WP_000286396.1 DUF1033 family protein -
  JQM34_RS06035 (JQM34_0001231) nagA 1279018..1280169 (-) 1152 WP_001134447.1 N-acetylglucosamine-6-phosphate deacetylase -
  JQM34_RS06040 (JQM34_0001232) - 1280310..1282127 (-) 1818 WP_084855890.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 38486.54 Da        Isoelectric Point: 9.4306

>NTDB_id=534539 JQM34_RS06020 WP_000355379.1 1276524..1277540(-) (comGB/cglB) [Streptococcus oralis strain SF100]
MDISQVFRPKRKKLATAKQKKIITLFNNLFSSGFHLVDIISFLGRSALLEKDYVAQMHQGLAQGKSFSEMMDSLGFSSAI
VTQLSLAEVHGNLHLSLGKIEEYLDNLSKVKKKLIEVATYPLILLGFLLLIMLGLRNYLLPQLDSSNIATQIIGNLPQIF
LGLVLVCSLSLLLALTFYKRSSKMRVFSMLARIPFLGIFVQTYLTAYYAREWGNMISQGMELMQIFQIMQEQGSQLFNEI
GQDLAQALQNGREFSQTIATYPFFKKELSLIIEYGEVKSKLGSELEIYAEKTWEAFFTRVNRTMNLVQPLVFIFVALIIV
LLYAAMLMPMYQNMEVNF

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=534539 JQM34_RS06020 WP_000355379.1 1276524..1277540(-) (comGB/cglB) [Streptococcus oralis strain SF100]
ATGGACATATCACAAGTCTTCAGGCCGAAACGGAAAAAATTAGCTACAGCTAAGCAGAAGAAAATCATCACCCTGTTTAA
CAATCTCTTCTCCAGTGGCTTTCATTTGGTGGATATTATTTCTTTCTTGGGAAGAAGTGCCCTGCTAGAAAAGGACTATG
TGGCCCAGATGCACCAAGGCTTGGCTCAGGGGAAATCTTTCTCAGAGATGATGGACAGCTTGGGCTTTTCAAGTGCTATT
GTGACCCAGTTATCTCTAGCTGAAGTGCATGGAAATCTTCACCTGAGTCTGGGGAAGATAGAAGAATATCTGGATAATTT
GTCCAAGGTCAAGAAAAAGTTAATCGAAGTGGCGACCTATCCTCTGATTTTGCTGGGATTTCTCCTGCTAATCATGCTGG
GGTTGAGAAACTATCTACTTCCTCAACTGGACAGTAGCAATATCGCCACTCAAATCATCGGCAATCTGCCACAAATATTT
CTGGGACTAGTGTTGGTTTGCTCTCTATCTTTGCTTTTAGCTCTCACTTTTTACAAAAGAAGTTCCAAGATGCGGGTCTT
CTCGATGTTAGCGCGGATTCCCTTTCTAGGAATCTTTGTCCAGACTTATCTGACAGCTTATTATGCGCGTGAATGGGGCA
ATATGATTTCGCAGGGGATGGAGCTGATGCAGATTTTTCAGATCATGCAGGAACAAGGCTCACAGCTCTTTAACGAAATC
GGTCAAGATTTGGCTCAAGCCCTGCAAAATGGCCGCGAATTTTCTCAAACCATAGCGACCTATCCTTTCTTTAAAAAGGA
GTTGAGTCTCATCATCGAGTATGGGGAAGTCAAGTCCAAGCTGGGGAGTGAGTTGGAAATCTATGCTGAAAAAACTTGGG
AAGCCTTTTTTACCCGAGTCAACCGCACCATGAACTTAGTACAGCCACTGGTTTTTATCTTTGTGGCCCTGATTATCGTT
TTACTTTATGCGGCAATGCTTATGCCCATGTATCAAAATATGGAGGTAAATTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(209-329)

Type II secretion system (T2SS), protein F (T2SSF)

(24-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB/cglB Streptococcus mitis SK321

92.308

100

0.923
  comGB/cglB Streptococcus mitis NCTC 12261

91.42

100

0.914
  comGB/cglB Streptococcus pneumoniae Rx1

89.645

100

0.896
  comGB/cglB Streptococcus pneumoniae D39

89.645

100

0.896
  comGB/cglB Streptococcus pneumoniae R6

89.645

100

0.896
  comGB/cglB Streptococcus pneumoniae TIGR4

89.645

100

0.896
  comYB Streptococcus gordonii str. Challis substr. CH1

73.512

99.408

0.731
  comYB Streptococcus mutans UA140

58.934

94.379

0.556
  comYB Streptococcus mutans UA159

58.934

94.379

0.556
  comGB Lactococcus lactis subsp. cremoris KW2

51.775

100

0.518