Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   JQM34_RS05985 Genome accession   NZ_CP069427
Coordinates   1273087..1274040 (-) Length   317 a.a.
NCBI ID   WP_049490205.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1268087..1279040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQM34_RS05960 (JQM34_0001215) - 1268843..1269466 (-) 624 WP_200370532.1 ribonuclease P -
  JQM34_RS05965 (JQM34_0001216) jag 1269522..1270508 (-) 987 WP_070683607.1 RNA-binding cell elongation regulator Jag/EloR -
  JQM34_RS05970 (JQM34_0001217) - 1270523..1271350 (-) 828 WP_000728097.1 membrane protein insertase YidC -
  JQM34_RS05975 (JQM34_0001218) rnpA 1271325..1271696 (-) 372 WP_000748120.1 ribonuclease P protein component -
  JQM34_RS05980 (JQM34_0001219) - 1271846..1273036 (-) 1191 WP_049490206.1 acetate kinase -
  JQM34_RS05985 (JQM34_0001220) comYH 1273087..1274040 (-) 954 WP_049490205.1 class I SAM-dependent methyltransferase Machinery gene
  JQM34_RS05990 (JQM34_0001221) - 1274099..1274689 (-) 591 WP_049490204.1 class I SAM-dependent methyltransferase -
  JQM34_RS05995 (JQM34_0001222) comGG/cglG 1274722..1275135 (-) 414 WP_070568123.1 competence type IV pilus minor pilin ComGG Machinery gene
  JQM34_RS06000 (JQM34_0001223) comGF/cglF 1275113..1275574 (-) 462 WP_070568120.1 competence type IV pilus minor pilin ComGF Machinery gene
  JQM34_RS06005 (JQM34_0001224) comGE/cglE 1275537..1275839 (-) 303 WP_200370534.1 competence type IV pilus minor pilin ComGE Machinery gene
  JQM34_RS06010 (JQM34_0001225) comGD/cglD 1275802..1276236 (-) 435 WP_200370535.1 competence type IV pilus minor pilin ComGD Machinery gene
  JQM34_RS06015 (JQM34_0001226) comGC/cglC 1276199..1276522 (-) 324 WP_200370536.1 competence type IV pilus major pilin ComGC Machinery gene
  JQM34_RS06020 (JQM34_0001227) comGB/cglB 1276524..1277540 (-) 1017 WP_000355379.1 competence type IV pilus assembly protein ComGB Machinery gene
  JQM34_RS06025 comGA 1277488..1278428 (-) 941 Protein_1185 competence type IV pilus ATPase ComGA -
  JQM34_RS06030 (JQM34_0001230) - 1278498..1278863 (-) 366 WP_000286396.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35596.66 Da        Isoelectric Point: 4.3067

>NTDB_id=534533 JQM34_RS05985 WP_049490205.1 1273087..1274040(-) (comYH) [Streptococcus oralis strain SF100]
MDFEKIEQAYTYLLENVHVIQSDLVTNFYDALVEQNSIYLDGETELEQVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAISLLLVLVVEELLHKEEISILEIGSGMGILGATFLTSLSKKVDYLGIEVDDLLIDLAASMSDVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAIASRYQVASSQEHTYAHHLLMEQGLKYLKSNGYAIFLAPSDLLTSPQ
SDLLKGWLKDEVSLAAIIALPEDIFSTASQAKSIFVLQKKRDKEIEPFVYPLTSLQDPSVLLTFKENFQNWSKGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=534533 JQM34_RS05985 WP_049490205.1 1273087..1274040(-) (comYH) [Streptococcus oralis strain SF100]
ATGGATTTTGAAAAAATTGAACAAGCTTATACGTATTTACTAGAGAATGTCCATGTCATCCAAAGTGATTTGGTGACCAA
CTTTTATGATGCCTTGGTAGAGCAAAATAGTATCTATCTAGATGGCGAGACCGAACTAGAGCAGGTCAAGGAGAACAATC
AAGCCCTTAAACGCTTAGCGCTTCGCAAGGAAGAGTGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCGGGACAAACG
GAACCTTTACAGGCCAATCACCAGTTTACACCAGATGCCATTTCCCTCCTCTTGGTACTTGTTGTAGAAGAGTTGCTTCA
TAAAGAGGAAATTAGCATCCTCGAAATAGGCTCTGGTATGGGCATTTTGGGGGCTACTTTCTTGACTTCCCTCTCTAAAA
AAGTAGATTACTTAGGAATCGAAGTGGATGACTTGCTGATTGATTTGGCAGCAAGTATGTCAGATGTGATTGGTTTACAG
GCTGGTTTTGTTCAAGGAGATGCCGTTCGTCCGCAAATGCTTAAAGAAAGCGACGTGGTCATCAGCGACTTGCCTGTAGG
CTATTACCCAGACGATGCCATCGCTTCTCGCTATCAAGTGGCTTCTAGTCAAGAGCATACCTATGCCCACCATTTGCTGA
TGGAACAAGGCCTCAAGTACCTTAAGTCAAATGGCTATGCTATTTTTCTAGCTCCGAGTGATTTATTGACCAGCCCTCAA
AGTGACTTATTAAAAGGGTGGCTCAAAGACGAAGTGAGTCTGGCTGCTATCATCGCTCTGCCAGAGGATATTTTCTCAAC
TGCAAGCCAAGCTAAAAGTATTTTTGTCTTACAGAAGAAAAGAGACAAGGAAATAGAACCCTTTGTCTACCCTCTTACTA
GCTTGCAAGATCCGTCAGTTTTGTTGACCTTTAAAGAAAATTTTCAAAATTGGAGCAAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

58.199

98.107

0.571
  comYH Streptococcus mutans UA159

57.878

98.107

0.568