Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   JOJ89_RS19700 Genome accession   NZ_CP069296
Coordinates   3870956..3871333 (-) Length   125 a.a.
NCBI ID   WP_203289127.1    Uniprot ID   -
Organism   Metabacillus sp. cB07     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3850562..3870298 3870956..3871333 flank 658


Gene organization within MGE regions


Location: 3850562..3871333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOJ89_RS19615 - 3850562..3851731 (-) 1170 WP_203289110.1 O-antigen ligase family protein -
  JOJ89_RS19620 - 3851837..3853369 (-) 1533 WP_203289111.1 oligosaccharide flippase family protein -
  JOJ89_RS19625 - 3853552..3854643 (-) 1092 WP_203289112.1 glycosyltransferase family 4 protein -
  JOJ89_RS19630 - 3854837..3855883 (-) 1047 WP_203289113.1 glycosyltransferase -
  JOJ89_RS19635 - 3855987..3856790 (-) 804 WP_203289114.1 DUF4422 domain-containing protein -
  JOJ89_RS19640 glf 3856787..3857902 (-) 1116 WP_203289115.1 UDP-galactopyranose mutase -
  JOJ89_RS19645 - 3858239..3858943 (-) 705 WP_203289116.1 sugar transferase -
  JOJ89_RS19650 galU 3859074..3859973 (-) 900 WP_203289117.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  JOJ89_RS19655 - 3859986..3861314 (-) 1329 WP_203289118.1 UDP-glucose/GDP-mannose dehydrogenase family protein -
  JOJ89_RS19660 - 3861460..3862224 (-) 765 WP_203289119.1 CpsB/CapC family capsule biosynthesis tyrosine phosphatase -
  JOJ89_RS19665 - 3862346..3863044 (-) 699 WP_277987841.1 CpsD/CapB family tyrosine-protein kinase -
  JOJ89_RS19670 - 3863034..3863783 (-) 750 WP_203289121.1 Wzz/FepE/Etk N-terminal domain-containing protein -
  JOJ89_RS21325 - 3864015..3864146 (-) 132 WP_267881656.1 hypothetical protein -
  JOJ89_RS19675 - 3864303..3864446 (-) 144 WP_203289122.1 hypothetical protein -
  JOJ89_RS19680 - 3864707..3866317 (+) 1611 WP_203289123.1 SWIM zinc finger family protein -
  JOJ89_RS19685 - 3866307..3869063 (+) 2757 WP_203289124.1 DEAD/DEAH box helicase -
  JOJ89_RS19690 - 3869357..3870298 (+) 942 WP_203289125.1 hypothetical protein -
  JOJ89_RS19695 - 3870332..3870784 (+) 453 WP_203289126.1 DUF2613 domain-containing protein -
  JOJ89_RS19700 ssbB 3870956..3871333 (-) 378 WP_203289127.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 13872.72 Da        Isoelectric Point: 9.5357

>NTDB_id=533420 JOJ89_RS19700 WP_203289127.1 3870956..3871333(-) (ssbB) [Metabacillus sp. cB07]
MINSVVLVGRLTKDPEMRYTADGAPVANITLAVNRTFKNASGVMEADFVNCTLWRKTAENTANYCRKGSIVGVSGRIQTR
NYENSEGKRVYVTEVVADSVRFMGGQTRELAVTEKPQQLQQTQPQ

Nucleotide


Download         Length: 378 bp        

>NTDB_id=533420 JOJ89_RS19700 WP_203289127.1 3870956..3871333(-) (ssbB) [Metabacillus sp. cB07]
GTGATCAATTCAGTTGTGCTCGTCGGACGCTTAACGAAAGATCCGGAAATGCGCTACACAGCAGACGGTGCCCCCGTCGC
CAACATCACACTTGCAGTCAACCGCACCTTTAAGAACGCATCAGGTGTCATGGAAGCAGACTTCGTCAACTGCACCCTCT
GGAGAAAAACCGCAGAAAACACGGCAAACTACTGCCGTAAAGGCTCCATCGTCGGCGTCTCCGGCCGCATTCAAACCCGC
AACTACGAAAACTCAGAAGGCAAGCGCGTCTACGTCACCGAAGTCGTAGCCGATTCCGTCCGCTTCATGGGCGGACAAAC
CCGCGAACTGGCCGTTACCGAAAAACCGCAGCAGCTGCAGCAAACCCAGCCGCAGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

74.775

88.8

0.664
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.961

82.4

0.56
  ssb Latilactobacillus sakei subsp. sakei 23K

61.682

85.6

0.528
  ssbB Streptococcus sobrinus strain NIDR 6715-7

48.544

82.4

0.4
  ssbB/cilA Streptococcus mitis NCTC 12261

44.66

82.4

0.368
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.66

82.4

0.368
  ssbA Streptococcus mutans UA159

44.66

82.4

0.368