Detailed information
Bioinformatically predicted
Overview
| Name | clpP | Type | Regulator |
| Locus tag | HMPREF1038_RS03735 | Genome accession | NC_018630 |
| Coordinates | 696386..696976 (+) | Length | 196 a.a. |
| NCBI ID | WP_000613476.1 | Uniprot ID | C1CJJ5 |
| Organism | Streptococcus pneumoniae gamPNI0373 | ||
| Function | degradation of ComX; degradation of ComW (predicted from homology) Competence regulation |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 695027..705931 | 696386..696976 | within | 0 |
Gene organization within MGE regions
Location: 695027..705931
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HMPREF1038_RS03725 (HMPREF1038_00757) | - | 695027..695494 (+) | 468 | WP_000136976.1 | cytidine/deoxycytidylate deaminase family protein | - |
| HMPREF1038_RS03730 (HMPREF1038_00758) | upp | 695583..696212 (+) | 630 | WP_000515974.1 | uracil phosphoribosyltransferase | - |
| HMPREF1038_RS03735 (HMPREF1038_00759) | clpP | 696386..696976 (+) | 591 | WP_000613476.1 | ATP-dependent Clp protease proteolytic subunit ClpP | Regulator |
| HMPREF1038_RS03740 (HMPREF1038_00760) | - | 697055..697303 (+) | 249 | WP_000462126.1 | YlbG family protein | - |
| HMPREF1038_RS03745 (HMPREF1038_00761) | - | 697404..698564 (+) | 1161 | WP_000726147.1 | ABC transporter substrate-binding protein | - |
| HMPREF1038_RS03750 (HMPREF1038_00762) | - | 698832..699701 (+) | 870 | WP_000941426.1 | branched-chain amino acid ABC transporter permease | - |
| HMPREF1038_RS03755 (HMPREF1038_00763) | - | 699705..700661 (+) | 957 | WP_000662293.1 | branched-chain amino acid ABC transporter permease | - |
| HMPREF1038_RS03760 (HMPREF1038_00764) | - | 700661..701425 (+) | 765 | WP_001186003.1 | ABC transporter ATP-binding protein | - |
| HMPREF1038_RS03765 (HMPREF1038_00765) | - | 701425..702135 (+) | 711 | WP_000062219.1 | ABC transporter ATP-binding protein | - |
| HMPREF1038_RS03770 (HMPREF1038_00766) | - | 702443..703099 (+) | 657 | WP_000268677.1 | CBS domain-containing protein | - |
| HMPREF1038_RS03775 (HMPREF1038_00767) | prfB | 703207..704302 (+) | 1096 | WP_010963246.1 | peptide chain release factor 2 | - |
| HMPREF1038_RS03780 (HMPREF1038_00768) | ftsE | 704320..705012 (+) | 693 | WP_000022268.1 | cell division ATP-binding protein FtsE | - |
| HMPREF1038_RS03785 (HMPREF1038_00769) | ftsX | 705005..705931 (+) | 927 | WP_000625536.1 | permease-like cell division protein FtsX | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 21367.37 Da Isoelectric Point: 4.5912
>NTDB_id=53335 HMPREF1038_RS03735 WP_000613476.1 696386..696976(+) (clpP) [Streptococcus pneumoniae gamPNI0373]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQ
SMEKVHADAERDNWMSAHETLEYGFIDEIMANNSLN
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQ
SMEKVHADAERDNWMSAHETLEYGFIDEIMANNSLN
Nucleotide
Download Length: 591 bp
>NTDB_id=53335 HMPREF1038_RS03735 WP_000613476.1 696386..696976(+) (clpP) [Streptococcus pneumoniae gamPNI0373]
ATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGAGAACGTTCTTACGATATTTACTCACGTCTTCTCAAAGACCGCAT
CATTATGCTGACAGGTCCGGTTGAAGACAATATGGCTAACTCTGTTATTGCCCAATTGCTTTTCTTGGATGCCCAAGATA
GTACAAAAGATATTTACCTTTATGTCAATACACCAGGTGGTTCTGTTTCAGCTGGTTTGGCAATCGTAGATACCATGAAC
TTTATCAAGGCAGATGTCCAAACCATTGTTATGGGAATGGCTGCATCTATGGGGACTGTCATCGCATCAAGTGGAGCAAA
AGGCAAACGTTTCATGCTTCCAAATGCTGAATACATGATTCACCAACCAATGGGCGGTACAGGTGGTGGTACCCAACAAA
CTGATATGGCTATCGCTGCAGAACACTTGCTCAAAACTCGTAATACCTTGGAAAAAATCTTGGCTGAAAATTCAGGTCAG
TCAATGGAAAAAGTCCATGCAGATGCAGAACGTGATAACTGGATGAGCGCCCATGAAACACTTGAATATGGCTTTATTGA
TGAAATTATGGCCAACAATTCATTGAACTAA
ATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGAGAACGTTCTTACGATATTTACTCACGTCTTCTCAAAGACCGCAT
CATTATGCTGACAGGTCCGGTTGAAGACAATATGGCTAACTCTGTTATTGCCCAATTGCTTTTCTTGGATGCCCAAGATA
GTACAAAAGATATTTACCTTTATGTCAATACACCAGGTGGTTCTGTTTCAGCTGGTTTGGCAATCGTAGATACCATGAAC
TTTATCAAGGCAGATGTCCAAACCATTGTTATGGGAATGGCTGCATCTATGGGGACTGTCATCGCATCAAGTGGAGCAAA
AGGCAAACGTTTCATGCTTCCAAATGCTGAATACATGATTCACCAACCAATGGGCGGTACAGGTGGTGGTACCCAACAAA
CTGATATGGCTATCGCTGCAGAACACTTGCTCAAAACTCGTAATACCTTGGAAAAAATCTTGGCTGAAAATTCAGGTCAG
TCAATGGAAAAAGTCCATGCAGATGCAGAACGTGATAACTGGATGAGCGCCCATGAAACACTTGAATATGGCTTTATTGA
TGAAATTATGGCCAACAATTCATTGAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpP | Streptococcus pneumoniae Rx1 |
99.49 |
100 |
0.995 |
| clpP | Streptococcus pneumoniae D39 |
99.49 |
100 |
0.995 |
| clpP | Streptococcus pneumoniae R6 |
99.49 |
100 |
0.995 |
| clpP | Streptococcus pneumoniae TIGR4 |
99.49 |
100 |
0.995 |
| clpP | Streptococcus thermophilus LMG 18311 |
92.308 |
99.49 |
0.918 |
| clpP | Streptococcus thermophilus LMD-9 |
92.308 |
99.49 |
0.918 |
| clpP | Streptococcus pyogenes JRS4 |
90.769 |
99.49 |
0.903 |
| clpP | Streptococcus pyogenes MGAS315 |
90.769 |
99.49 |
0.903 |
| clpP | Streptococcus mutans UA159 |
85.714 |
100 |
0.857 |
| clpP | Lactococcus lactis subsp. lactis strain DGCC12653 |
85.128 |
99.49 |
0.847 |
| clpP | Lactococcus lactis subsp. cremoris KW2 |
84.615 |
99.49 |
0.842 |
| clpP | Bacillus subtilis subsp. subtilis str. 168 |
58.854 |
97.959 |
0.577 |
| clpP | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
57.513 |
98.469 |
0.566 |