Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JQC75_RS01780 Genome accession   NZ_CP069213
Coordinates   379981..381240 (-) Length   419 a.a.
NCBI ID   WP_203325801.1    Uniprot ID   -
Organism   Shewanella litorisediminis strain SMK1-12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 374981..386240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQC75_RS01755 (JQC75_01755) mutT 376961..377356 (-) 396 WP_203325796.1 8-oxo-dGTP diphosphatase MutT -
  JQC75_RS01760 (JQC75_01760) yacG 377398..377613 (-) 216 WP_203325797.1 DNA gyrase inhibitor YacG -
  JQC75_RS01765 (JQC75_01765) zapD 377676..378410 (-) 735 WP_203325798.1 cell division protein ZapD -
  JQC75_RS01770 (JQC75_01770) coaE 378403..379020 (-) 618 WP_203325799.1 dephospho-CoA kinase -
  JQC75_RS01775 (JQC75_01775) pilD 379020..379934 (-) 915 WP_203325800.1 prepilin peptidase Machinery gene
  JQC75_RS01780 (JQC75_01780) pilC 379981..381240 (-) 1260 WP_203325801.1 type II secretion system F family protein Machinery gene
  JQC75_RS01785 (JQC75_01785) pilB 381399..383105 (-) 1707 WP_203325802.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JQC75_RS01790 (JQC75_01790) - 383157..383633 (-) 477 WP_203325803.1 pilin -
  JQC75_RS01795 (JQC75_01795) nadC 385227..386084 (-) 858 WP_203325804.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46004.25 Da        Isoelectric Point: 9.9863

>NTDB_id=532908 JQC75_RS01780 WP_203325801.1 379981..381240(-) (pilC) [Shewanella litorisediminis strain SMK1-12]
MATAVANKSKKQTQKLAPKVYNFEWKGLNRDGKKSSGELRGASVAEIKTILKNQGINPKVVRKKSDGLFGASNKKINAMD
IAMITRQIATMLMAGVPLVTTIEILGKGHEKPKMRELLGTILNDIQAGIPLSDALRPHRIYFDDLYVDLVAAGEHSGSLD
TVFDRIATYREKAEALKSKIKKAMFYPAAVVVVAIAVTTLLLLFVVPQFEEIFASFGAELPAFTQMIINISRFLQSSWYF
FLTAIVVSIWLYVRAHRNSQAVRDRQDEFVLKIPIIGEILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNAVYRK
ALLRIRTEVMAGMQMNVAMRTVNLFPDMLIQMVMIGEESGSLDNMLNKIANIYEMQVDDAVDGLSSLIEPIMMVVIGTLV
GGLIVGMYLPIFQMGNVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=532908 JQC75_RS01780 WP_203325801.1 379981..381240(-) (pilC) [Shewanella litorisediminis strain SMK1-12]
ATGGCAACGGCCGTCGCAAACAAATCCAAAAAGCAGACACAAAAGCTGGCCCCCAAGGTCTACAACTTTGAATGGAAGGG
CTTGAACCGCGATGGAAAAAAATCCAGCGGCGAACTCAGGGGCGCATCTGTCGCCGAAATTAAAACTATTCTTAAAAATC
AAGGAATAAACCCCAAGGTCGTCCGTAAAAAGTCTGATGGCCTCTTTGGTGCCAGCAATAAAAAGATCAATGCGATGGAT
ATCGCCATGATCACCCGCCAAATCGCCACCATGCTGATGGCAGGCGTGCCCTTGGTCACTACCATAGAAATCCTCGGTAA
AGGCCATGAAAAGCCCAAGATGAGGGAGTTGCTGGGTACCATTCTCAATGACATTCAAGCGGGTATTCCGCTCTCTGATG
CGCTGCGTCCCCACAGGATTTACTTCGATGACTTGTATGTCGACCTGGTTGCCGCCGGTGAACACTCGGGTTCTCTCGAT
ACTGTATTTGACCGCATCGCAACCTATAGAGAAAAAGCAGAAGCCCTTAAGTCAAAAATCAAAAAAGCCATGTTCTACCC
AGCTGCGGTTGTGGTGGTGGCTATTGCTGTTACCACCTTACTGCTGCTCTTTGTAGTGCCCCAGTTTGAAGAGATTTTCG
CAAGCTTTGGTGCAGAGCTTCCTGCTTTCACGCAGATGATTATCAATATTTCCAGATTTTTGCAGTCATCCTGGTATTTC
TTCCTGACCGCCATCGTTGTCTCAATCTGGCTCTATGTCAGGGCACACAGAAACTCCCAGGCGGTGAGAGACAGGCAAGA
CGAATTTGTGCTTAAAATACCTATAATTGGTGAAATTTTACACAAGGCCGCCATGGCACGATTTGCCCGCACCCTGGCGA
CCACCTTCGCTGCCGGTGTGCCGTTAATTGACGGTTTGGAGTCTGCAGCAGGCGCTTCTGGCAATGCCGTGTACCGTAAA
GCCCTTCTGAGAATTCGCACCGAAGTGATGGCAGGTATGCAAATGAACGTAGCTATGCGCACCGTTAATCTCTTCCCAGA
TATGTTGATTCAAATGGTGATGATTGGTGAAGAGTCAGGTTCGCTCGATAATATGCTCAATAAAATTGCCAACATCTATG
AGATGCAGGTAGATGATGCTGTGGATGGCCTTTCAAGCCTGATTGAACCCATTATGATGGTGGTTATCGGCACCCTTGTG
GGCGGCCTGATTGTTGGTATGTATCTGCCTATCTTCCAGATGGGTAACGTGGTTGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(85-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.808

94.511

0.527
  pilC Acinetobacter baylyi ADP1

51.385

94.749

0.487
  pilC Acinetobacter baumannii D1279779

51.005

94.988

0.484
  pilC Legionella pneumophila strain ERS1305867

49.257

96.42

0.475
  pilC Vibrio cholerae strain A1552

45.854

97.852

0.449
  pilC Vibrio campbellii strain DS40M4

44.068

98.568

0.434
  pilG Neisseria meningitidis 44/76-A

43.142

95.704

0.413
  pilG Neisseria gonorrhoeae MS11

43.142

95.704

0.413